Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01657 ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCCTGCTTTCTTCTTCTTCTCTTCCTCTTTATCTCTCTCCCATCTCTCACTGTCTCTGTCTCGGAAGCCGAAGTTTCGTATATTACTCAACGTCAACTATTGACTCTAAAAGAACACGATGAACTCCCCGATGACTTCAAATACAAACTTGACATTCCTGACACTTTTTCAAATGAGAGGTTGAAGAAAGCTTATGTAGCCCTTCAAGCATGGAAATTAGCTGTTTATTCTGACCCACAAAACATGACCGCCAATTGGGTTGGCGCCGATGTTTGTTCTTACAACGGCGTCTTCTGTGCTCCGGCGCTTGATAACCCGAAAATTGAGGTTGTGGCTGGCATTGATTTGAACGATGGTGACATTGCAGGGTACTTGCCTCCGGAACTTGGGCTTTTGACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTTTGTGGGATCATTCCTTCTAGTTTCTCCAAGCTTGTACTCATGTTTGAGTTTGATGTCAGCAACAACCGCTTCGTTGGCCACTTTCCTCTCGTTGTCCTCGAATGGCCGACTGCGAAGTACCTCGATCTCAGGTACAATGACTTCGAAGGAGAAATCCCCTCCACACTTTTCATCAAGGAGTTCGACGCCATCTTCCTAAACAACAACAGATTCAATTCTCTAATCCCTGAAACCATTGGAAACTCAACCGTCTCTGTTGTCTCCTTCGCCAACAACGAATTTCACGGCTGCATTCCTAACACCATTGGCCAAATGTCTAACCTCAACCAAATTCTCTTCATCGGCAACAAACTCGGAGGCTGTTTTCCACCTGAGATCGGAAACCTCGTCAATCTCACAGTTTTGGATGTTAGCAACAATGGCTTCGTAGGCCAATTGCCGGAATCATTTTCTGGCCTCCAAAATTTGGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTGTCTCTGGAGGCCTTTGCAAGTTGCCTAAATTGGCTAACTTCACTTTCTCCTTTAATTACTTTGATGGGAAAGATGCATCGTGTGTTGCATCTAAAGGATTAGAGAAGCTCTTTGATGATGGCCAAAATTGTATAGCAAATCAACCAGGGCAAAAAGATGCAAACAAATGTAGCACTGTCTTGAAGAAATCAGTGGAATGTGGCAATTGTGGTGGTGGGTCGAGTTCTCCTGGTGTGCCGTCGACTCCTGAGGATCCATATGATCAATCTCCATCACCAAGATATAGATCTCCACCACCTTCAGTTGTGACTCCACCATCTCCAAGTGAGACTTCTGTTCCATCATCACCACCTACCACTGAAACACCTACTTCATCTCCAGTTGAATCTCCCCTACCACCAGCCTATTCCTCTCCTCCACCACCGGTTCATTCCCCACCACCCCCTGTTCATTCACCACCACCACCGATCTCCTCTCCTCCACCTCCTGTTCACTCACCACCACCACCAGTTCACTCTCCACCTCCACCGGTTCACTCTCCACCACCCCCTGTCCACTCTCCACCACCCCCCGTCCACTCCCCACCACCACCGGTTCACTCTCCACCTCCCCCCGTCCACTCTCCACCACCTCCCGTCCATTCCCCACCACCACCTGTCTACTCTCCACCTCCACCAGTCTATTCTCCACCACCACCTGTCTACTCACCTCCACCACCACCTGTTTACTCCCCACCGCCACCAGTTCAATCTCCACCACCTCCGACTGCATCTCCTCCTCCTCCCGATTCTTCACCACCACCGTCATTTGAAGATGTGATTCTCCCACCAAATATCGGCTTCGAATATGCATCACCGCCTCCACCCCTGTTTCCCGGTTATTGA 1860 48.44 MASLHRKQANHACFLLLLFLFISLPSLTVSVSEAEVSYITQRQLLTLKEHDELPDDFKYKLDIPDTFSNERLKKAYVALQAWKLAVYSDPQNMTANWVGADVCSYNGVFCAPALDNPKIEVVAGIDLNDGDIAGYLPPELGLLTDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPLVVLEWPTAKYLDLRYNDFEGEIPSTLFIKEFDAIFLNNNRFNSLIPETIGNSTVSVVSFANNEFHGCIPNTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVLDVSNNGFVGQLPESFSGLQNLEIMDVSNNELRGSVSGGLCKLPKLANFTFSFNYFDGKDASCVASKGLEKLFDDGQNCIANQPGQKDANKCSTVLKKSVECGNCGGGSSSPGVPSTPEDPYDQSPSPRYRSPPPSVVTPPSPSETSVPSSPPTTETPTSSPVESPLPPAYSSPPPPVHSPPPPVHSPPPPISSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVYSPPPPVYSPPPPPVYSPPPPVQSPPPPTASPPPPDSSPPPSFEDVILPPNIGFEYASPPPPLFPGY* 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23038201 23040060 - Chy11G202370.1 Chy11g01657 237418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01657 619 MobiDBLite consensus disorder prediction 452 548 - -
Chy11g01657 619 MobiDBLite consensus disorder prediction 564 598 - -
Chy11g01657 619 Gene3D Ribonuclease Inhibitor 72 237 IPR032675 -
Chy11g01657 619 Pfam Leucine rich repeat 287 344 IPR001611 GO:0005515
Chy11g01657 619 MobiDBLite consensus disorder prediction 564 619 - -
Chy11g01657 619 MobiDBLite consensus disorder prediction 409 438 - -
Chy11g01657 619 SUPERFAMILY L domain-like 85 366 - -
Chy11g01657 619 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 520 614 - -
Chy11g01657 619 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 456 532 - -
Chy11g01657 619 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 10 406 - -
Chy11g01657 619 MobiDBLite consensus disorder prediction 395 548 - -
Chy11g01657 619 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 520 614 - -
Chy11g01657 619 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 456 532 - -
Chy11g01657 619 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 406 - -
Chy11g01657 619 Gene3D Ribonuclease Inhibitor 238 357 IPR032675 -
Chy11g01657 619 PRINTS Proline rich extensin signature 437 453 - -
Chy11g01657 619 PRINTS Proline rich extensin signature 455 472 - -
Chy11g01657 619 PRINTS Proline rich extensin signature 474 499 - -
Chy11g01657 619 PRINTS Proline rich extensin signature 413 434 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01657 - - - csv:101221838 758.444
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00552 Chy-Chr6:3765008 Chy11g01657 Chy-Chr11:23038201 3.27E-124 dispersed
Chy11g01657 Chy-Chr11:23038201 Chy02g01907 Chy-Chr2:22139730 3.47E-140 dispersed
Chy11g01657 Chy-Chr11:23038201 Chy02g01174 Chy-Chr2:8415487 1.43E-85 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g01360 . 72 423 Leucine-rich Repeat extension Gene Families AT1G62440 61.1 1.3e-40 165.2
Chy02g01907 . 54 221 Leucine-rich Repeat extension Gene Families AT1G62440 70.2 2.2e-40 164.5
Chy02g01907 . 25 396 Leucine-rich Repeat extension Gene Families AT4G13340 75.3 2.8e-64 243.8
Chy05g01360 . 40 423 Leucine-rich Repeat extension Gene Families AT4G13340 73.5 1.8e-63 241.1
Chy11g01657 . 14 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.2 5.2e-39 159.8
Chy02g01907 . 22 391 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 3.7e-70 262.7
Chy05g01360 . 47 419 Leucine-rich Repeat extension Gene Families AT3G24480 73.3 5.4e-69 258.8
Chy11g01657 . 26 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.7 3.8e-38 156.4
Chy06g00552 . 15 369 Leucine-rich Repeat extension Gene Families AT3G22800 65.3 4.4e-52 202.6
Chy01g00315 . 2 301 Leucine-rich Repeat extension Gene Families AT3G22800 64.8 1.5e-36 151.0
Chy02g01907 . 38 396 Leucine-rich Repeat extension Gene Families AT5G25550 62.6 7.8e-40 161.8
Chy05g01360 . 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 3.3e-38 156.4
Chy06g00552 . 27 365 Leucine-rich Repeat extension Gene Families AT5G25550 65.1 9.6e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01657 Chy_Chr11 FPKM 0.853045 1.864554 5.150663 5.423709 30.940653 27.384096 29.712551 7.600808 7.269368 8.723842