Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01727 ATGGGGAAGAAAGGAGGTAGCTCATGGTTGACTGCTGTCAAAAGGGCTTTCAGATCTCCCACTAAAGATGACGACGAAAAGAGGAGAGACAAACGTCGATGGATTTTTAGAAAACCAACTAATCAGCAGCCGGAGCCACTTGCTGCCCACCAACCGCCGTCTAAGCCGGCAGCGGCTCTACCCATTGACCCTGTAGCTTTGGAAAACCAGAAACATGCCCTTGCTGTGGCTGAAGCTGCCATGGTTGCTGCTAGAGCGTCTGCACAAGCTGTCCACCTTACTCGCCCTGCTCGGCCTGGGTTGGATCGACATCGTCTCGCCGCCATTGTGATTCAAACGGCCTTTAGAGGATATCTGGCAAGGAGGGCTCTGCGGGCATTGAAGGGGTTAGTGAAGTTGCAAGCATTAGTGAGAGGACACAATGTGAGGAAGCAAGCAAAGACTACACTGCAATGTATGAAAGCATTAGTGAGAGTACAGGAAAAAGTGCTGGATCACCGGATGCGACTCTCCCTCGAGGGCAGCCGACGGTCGACCTTTAGTGACACCAACAGCGTCTACGAATCTCGCTATCCTCAAGACGTGTCTGAAAGGAAGACTATTAAGTGTGTGTCAAGAGAAGGAAGCAGCATTACAGAGGATTGGGATGAACGTGCTCACACAGTTGACGAAGTTAAGGCAATGTTACAACTTAGAAGAGATGCTGCTTTGAATCGTGACAACATTTTATCTCATTCCTTTTCTCAGCAGATATGGAGGACTGGAAAGAGCCCATCAATAGGAAATCAAACAGAGCTTGAAGAAGGACAAAAATGGCTAGACCAATGGATGGCAAAGAAGCCATGGGAGAGCAGGGCAAGAGCTTCCACAGATCACAGACCACAGCCCCTTAAAACCCTTGAAATCGACACCTCTCGACCCTACTCCTACTTATCTCCCAACAATCTCCACACAACCAATTATCAACCTCAATCCCAAAGATCAAACTCGCTTTCCTCCTCATCCCCACTCCACAGAGCCCATCAACACCAATTCTCCATCACCCCATCCCCGTCAAAATCTCGACCGGTCCCTCAAGTTCGGTCGGCGAGTCCTCGCTACAGCAGAGAAGATAGAAATCAAATCAACCATCACCACGTTACATCCCAAACACCAAGCTTGAAGTCAAAATATCAACATCAAAAAGGGGGTAGTGGTGGTGGGACTTCAATGCCAAATTACATGGCAGCAACAGAGTCAGCCAAGGCACGAGTGCGGTCACAAAGTGCACCAAGGCAAAGGCCAGCAACGCCTGAGAGGGAACGAGTTGGTGGGACTGCGAGGAAACGGCTATCGTTTCCAGTACCGCCGGATCCTTACGGTAGAATAGCAGGGGGTTCTGTTTATGGGAATAGCATGAAGAGTCCAAGCTTTAAGAGTGCTTGTGGAAGGTATGGTGGGTTGGAGGAACAGTCTAACTATTCTTCTTGCTATACAGAAAGCCATGGAGGAGAGGTTTCTCCATCTTCAACCACTGATCTTAGAAGGTGGTTGAGATGA 1539 49.19 MGKKGGSSWLTAVKRAFRSPTKDDDEKRRDKRRWIFRKPTNQQPEPLAAHQPPSKPAAALPIDPVALENQKHALAVAEAAMVAARASAQAVHLTRPARPGLDRHRLAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEKVLDHRMRLSLEGSRRSTFSDTNSVYESRYPQDVSERKTIKCVSREGSSITEDWDERAHTVDEVKAMLQLRRDAALNRDNILSHSFSQQIWRTGKSPSIGNQTELEEGQKWLDQWMAKKPWESRARASTDHRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQPQSQRSNSLSSSSPLHRAHQHQFSITPSPSKSRPVPQVRSASPRYSREDRNQINHHHVTSQTPSLKSKYQHQKGGSGGGTSMPNYMAATESAKARVRSQSAPRQRPATPERERVGGTARKRLSFPVPPDPYGRIAGGSVYGNSMKSPSFKSACGRYGGLEEQSNYSSCYTESHGGEVSPSSTTDLRRWLR* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23681797 23684966 - Chy11G203070.1 Chy11g01727 237488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01727 512 MobiDBLite consensus disorder prediction 486 512 - -
Chy11g01727 512 ProSiteProfiles IQ motif profile. 128 155 IPR000048 GO:0005515
Chy11g01727 512 SMART iq_5 126 147 IPR000048 GO:0005515
Chy11g01727 512 SMART iq_5 103 125 IPR000048 GO:0005515
Chy11g01727 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 149 IPR027417 -
Chy11g01727 512 Pfam IQ calmodulin-binding motif 131 147 IPR000048 GO:0005515
Chy11g01727 512 Pfam IQ calmodulin-binding motif 107 125 IPR000048 GO:0005515
Chy11g01727 512 Pfam Protein of unknown function (DUF4005) 364 459 IPR025064 -
Chy11g01727 512 Gene3D - 101 156 - -
Chy11g01727 512 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 512 - -
Chy11g01727 512 MobiDBLite consensus disorder prediction 378 427 - -
Chy11g01727 512 MobiDBLite consensus disorder prediction 283 299 - -
Chy11g01727 512 MobiDBLite consensus disorder prediction 1 59 - -
Chy11g01727 512 MobiDBLite consensus disorder prediction 17 38 - -
Chy11g01727 512 ProSiteProfiles IQ motif profile. 104 132 IPR000048 GO:0005515
Chy11g01727 512 PANTHER IQ-DOMAIN 5-RELATED 1 512 - -
Chy11g01727 512 MobiDBLite consensus disorder prediction 305 361 - -
Chy11g01727 512 MobiDBLite consensus disorder prediction 283 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01727 - - - csv:101207978 967.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00025 Chy-Chr6:168604 Chy11g01727 Chy-Chr11:23681797 6.75E-145 dispersed
Chy06g00922 Chy-Chr6:6776475 Chy11g01727 Chy-Chr11:23681797 4.32E-25 dispersed
Chy10g01339 Chy-Chr10:17688916 Chy11g01727 Chy-Chr11:23681797 3.62E-27 dispersed
Chy11g01727 Chy-Chr11:23681797 Chy04g02086 Chy-Chr4:26265661 3.81E-26 dispersed
Chy11g01727 Chy-Chr11:23681797 Chy09g00721 Chy-Chr9:9637359 9.80E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy09g00721 . 1 499 IQD Protein Family AT3G52290 51.7 2.2e-98 356.3
Chy02g01601 . 1 295 IQD Protein Family AT3G22190 62.5 6.6e-76 281.6
Chy07g00252 . 1 466 IQD Protein Family AT2G26180 56.8 1.5e-112 403.3
Chy02g00253 . 1 274 IQD Protein Family AT2G33990 52.9 4.0e-63 238.4
Chy07g00958 . 65 240 IQD Protein Family AT2G33990 54.7 1.3e-48 190.3
Chy02g00253 . 1 232 IQD Protein Family AT3G15050 50.9 4.7e-56 214.9
Chy07g00958 . 68 241 IQD Protein Family AT3G15050 61.6 9.8e-54 207.2
Chy11g01727 . 1 513 IQD Protein Family AT4G00820 50.4 6.4e-108 388.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01727 Chy_Chr11 FPKM 38.475983 38.924438 47.906563 47.697758 34.422516 38.557823 33.882278 78.153778 75.340904 76.074188