Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01727 ATGGGGAAGAAAGGAGGTAGCTCATGGTTGACTGCTGTCAAAAGGGCTTTCAGATCTCCCACTAAAGATGACGACGAAAAGAGGAGAGACAAACGTCGATGGATTTTTAGAAAACCAACTAATCAGCAGCCGGAGCCACTTGCTGCCCACCAACCGCCGTCTAAGCCGGCAGCGGCTCTACCCATTGACCCTGTAGCTTTGGAAAACCAGAAACATGCCCTTGCTGTGGCTGAAGCTGCCATGGTTGCTGCTAGAGCGTCTGCACAAGCTGTCCACCTTACTCGCCCTGCTCGGCCTGGGTTGGATCGACATCGTCTCGCCGCCATTGTGATTCAAACGGCCTTTAGAGGATATCTGGCAAGGAGGGCTCTGCGGGCATTGAAGGGGTTAGTGAAGTTGCAAGCATTAGTGAGAGGACACAATGTGAGGAAGCAAGCAAAGACTACACTGCAATGTATGAAAGCATTAGTGAGAGTACAGGAAAAAGTGCTGGATCACCGGATGCGACTCTCCCTCGAGGGCAGCCGACGGTCGACCTTTAGTGACACCAACAGCGTCTACGAATCTCGCTATCCTCAAGACGTGTCTGAAAGGAAGACTATTAAGTGTGTGTCAAGAGAAGGAAGCAGCATTACAGAGGATTGGGATGAACGTGCTCACACAGTTGACGAAGTTAAGGCAATGTTACAACTTAGAAGAGATGCTGCTTTGAATCGTGACAACATTTTATCTCATTCCTTTTCTCAGCAGATATGGAGGACTGGAAAGAGCCCATCAATAGGAAATCAAACAGAGCTTGAAGAAGGACAAAAATGGCTAGACCAATGGATGGCAAAGAAGCCATGGGAGAGCAGGGCAAGAGCTTCCACAGATCACAGACCACAGCCCCTTAAAACCCTTGAAATCGACACCTCTCGACCCTACTCCTACTTATCTCCCAACAATCTCCACACAACCAATTATCAACCTCAATCCCAAAGATCAAACTCGCTTTCCTCCTCATCCCCACTCCACAGAGCCCATCAACACCAATTCTCCATCACCCCATCCCCGTCAAAATCTCGACCGGTCCCTCAAGTTCGGTCGGCGAGTCCTCGCTACAGCAGAGAAGATAGAAATCAAATCAACCATCACCACGTTACATCCCAAACACCAAGCTTGAAGTCAAAATATCAACATCAAAAAGGGGGTAGTGGTGGTGGGACTTCAATGCCAAATTACATGGCAGCAACAGAGTCAGCCAAGGCACGAGTGCGGTCACAAAGTGCACCAAGGCAAAGGCCAGCAACGCCTGAGAGGGAACGAGTTGGTGGGACTGCGAGGAAACGGCTATCGTTTCCAGTACCGCCGGATCCTTACGGTAGAATAGCAGGGGGTTCTGTTTATGGGAATAGCATGAAGAGTCCAAGCTTTAAGAGTGCTTGTGGAAGGTATGGTGGGTTGGAGGAACAGTCTAACTATTCTTCTTGCTATACAGAAAGCCATGGAGGAGAGGTTTCTCCATCTTCAACCACTGATCTTAGAAGGTGGTTGAGATGA 1539 49.19 MGKKGGSSWLTAVKRAFRSPTKDDDEKRRDKRRWIFRKPTNQQPEPLAAHQPPSKPAAALPIDPVALENQKHALAVAEAAMVAARASAQAVHLTRPARPGLDRHRLAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEKVLDHRMRLSLEGSRRSTFSDTNSVYESRYPQDVSERKTIKCVSREGSSITEDWDERAHTVDEVKAMLQLRRDAALNRDNILSHSFSQQIWRTGKSPSIGNQTELEEGQKWLDQWMAKKPWESRARASTDHRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQPQSQRSNSLSSSSPLHRAHQHQFSITPSPSKSRPVPQVRSASPRYSREDRNQINHHHVTSQTPSLKSKYQHQKGGSGGGTSMPNYMAATESAKARVRSQSAPRQRPATPERERVGGTARKRLSFPVPPDPYGRIAGGSVYGNSMKSPSFKSACGRYGGLEEQSNYSSCYTESHGGEVSPSSTTDLRRWLR* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23681797 23684966 - Chy11G203070.1 Chy11g01727 237488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01727 512 MobiDBLite consensus disorder prediction 486 512 - -
Chy11g01727 512 ProSiteProfiles IQ motif profile. 128 155 IPR000048 GO:0005515
Chy11g01727 512 SMART iq_5 126 147 IPR000048 GO:0005515
Chy11g01727 512 SMART iq_5 103 125 IPR000048 GO:0005515
Chy11g01727 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 149 IPR027417 -
Chy11g01727 512 Pfam IQ calmodulin-binding motif 131 147 IPR000048 GO:0005515
Chy11g01727 512 Pfam IQ calmodulin-binding motif 107 125 IPR000048 GO:0005515
Chy11g01727 512 Pfam Protein of unknown function (DUF4005) 364 459 IPR025064 -
Chy11g01727 512 Gene3D - 101 156 - -
Chy11g01727 512 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 512 - -
Chy11g01727 512 MobiDBLite consensus disorder prediction 378 427 - -
Chy11g01727 512 MobiDBLite consensus disorder prediction 283 299 - -
Chy11g01727 512 MobiDBLite consensus disorder prediction 1 59 - -
Chy11g01727 512 MobiDBLite consensus disorder prediction 17 38 - -
Chy11g01727 512 ProSiteProfiles IQ motif profile. 104 132 IPR000048 GO:0005515
Chy11g01727 512 PANTHER IQ-DOMAIN 5-RELATED 1 512 - -
Chy11g01727 512 MobiDBLite consensus disorder prediction 305 361 - -
Chy11g01727 512 MobiDBLite consensus disorder prediction 283 451 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00025 Chy-Chr6:168604 Chy11g01727 Chy-Chr11:23681797 6.75E-145 dispersed
Chy06g00922 Chy-Chr6:6776475 Chy11g01727 Chy-Chr11:23681797 4.32E-25 dispersed
Chy10g01339 Chy-Chr10:17688916 Chy11g01727 Chy-Chr11:23681797 3.62E-27 dispersed
Chy11g01727 Chy-Chr11:23681797 Chy04g02086 Chy-Chr4:26265661 3.81E-26 dispersed
Chy11g01727 Chy-Chr11:23681797 Chy09g00721 Chy-Chr9:9637359 9.80E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01727 - - csv:101207978 967.607