Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01760 ATGGATGATAGAGGTGGTGGATCGTTTGTTGCTGTGAGGAGGATTTCTCAAGGTCTGGAGCGAGGAAATACTTGCCATTCAACTTCAGCTGAGGTTGTGGCAGGATCAGCTGCATGGCTTGGCCGGGGTCTTTCTTGTGTTTGTGCACAGAGAAGAGAAAGTGATGCACGCCCATCATTTGACCTAACCCCTGCACAGGAGGAATGCTTGCTGAGACTGCAGAACCGCATAGATATTGCCTATGATAGTTCAATCACTGAGCACCAGGAGGCTCTAAGGACTCTATGGAATGTGGCCTTCCCAGAGGAAGAACTTCGTGGTTTGATATCTGAGCAGTGGAAGGAAATGGGCTGGCAAGGAAAGGATCCATCAACAGATTTTAGGGGTGGTGGTTTTATTTCATTGGAGAACTTGTTGTTCTTTGCCAAAAATTTCCCGAAGTCATTCCAGGATCTCCTTCGAAAGCAGGAAGGAGATCGGTCTCTATGGGAATACCCATTTGCCGTAGCTGGGGTGAACATTACATTCATGCTTATTCAAATGCTTGACCTTGAAGCAGTCAAGCCACGGACTCTTGTGGGAGCAACTTTCTTGAAGTTTCTTGCAGAAAACGATTCAGCATTCGACCTACTCTATTGTATCACGTTCAAACTAATGGATCATGAATGGCTTGCCATGCATGCATCATATATGGACTTTAATACGGTAATGAAAGCAACACGACGACAGCTGGAAAAAGAGCTTCTAATTGAGGACATTTCAAGACTAGAAGAACTGCCCTCATACGGCCTTCTCAATCGATGA 804 45.65 MDDRGGGSFVAVRRISQGLERGNTCHSTSAEVVAGSAAWLGRGLSCVCAQRRESDARPSFDLTPAQEECLLRLQNRIDIAYDSSITEHQEALRTLWNVAFPEEELRGLISEQWKEMGWQGKDPSTDFRGGGFISLENLLFFAKNFPKSFQDLLRKQEGDRSLWEYPFAVAGVNITFMLIQMLDLEAVKPRTLVGATFLKFLAENDSAFDLLYCITFKLMDHEWLAMHASYMDFNTVMKATRRQLEKELLIEDISRLEELPSYGLLNR* 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23987019 23992698 - Chy11G203400.1 Chy11g01760 237521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01760 267 Pfam ELMO/CED-12 family 72 237 IPR006816 -
Chy11g01760 267 PANTHER ELMO/CED-12 FAMILY PROTEIN-RELATED 2 267 - -
Chy11g01760 267 PANTHER ENGULFMENT AND CELL MOTILITY 2 267 - -
Chy11g01760 267 ProSiteProfiles ELMO domain profile. 87 248 IPR006816 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01760 K23538 ELMOD; ELMO domain-containing protein - csv:101210177 540.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00786 Chy-Chr10:13910371 Chy11g01760 Chy-Chr11:23987019 7.56E-95 dispersed
Chy11g01158 Chy-Chr11:17579925 Chy11g01760 Chy-Chr11:23987019 8.24E-101 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1240 . . . . . . . . Cmo04g01927 . . . . . Sed06g1749 . . Bhi07g01921 Tan04g0051 Cmetu10g1689 Lac13g0056 Hepe10g1520 . . . . . . . . . . . . . Lsi04g00678 . Chy11g01760 Cme11g02293 Blo02g00171 . . . Bpe14g00771 . . . . . . Cma04g01831 . . . . . . . . . . . . Cla11g01342 Cam11g1400 Cec11g1423 Cco11g1419 Clacu11g1557 Cmu11g1378 Cre11g1798 Lsi09g01690 . . .
Vvi15g302 Blo01g00260 Blo12g00196 Bda03g01032 Bda08g00074 . Bpe05g01062 . . Cmo08g00152 Cmo17g00501 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g00867 Chy11g01760 . . . . . . . . . . . . Cma08g00153 Cma17g00529 Car08g00134 Car17g00510 Cpe17g01053 . Bhi12g02212 . . . . . . Cla06g00229 Cam06g0251 Cec06g0250 Cco06g0247 Clacu06g0244 Cmu06g0241 Cre06g1010 Lsi09g01690 . . Cme11g02293
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000645 4 14 5 3 5 2 4 2 2 2 2 2 4 2 2 4 2 6 3 2 2 2 2 3 2 2 2 8 5 2 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01760 Chy_Chr11 FPKM 1.697736 1.458751 1.723149 1.587144 4.442972 4.043322 4.659172 2.647099 2.590123 2.735714