Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01788 ATGGAGGAAGAAGAGCAACGCCTAGAGTTGATTAGCCATGCCATTAGGAGGCTACTTGAAGATAACAAGAACAAGAAATCCTCTGACCGGAGCTCCGTCGACGATGGCGATGAAAACGGAAACCCTTCTCTCCTCCGCGACTTGCTCTCTCAGATTGAGTCACTGAAAGAAGGAACAGAATCAGAAGAGTTCACTTCTGCATTAGATACTTTGAAAACAAAAGTTGAAAGTTGTATTAAAGAGGAAATTGTTGATGAGGAGTGTAGTAGAGAAGACATTATTGTCAAAGAGTTGAAGAAGCTGAAGAGGCAAAACCTTTTAACTCATTGTCTTCTCTCAGTGATGATTGTATTGACTGTTGTTTGGCAGCTCTCTGAGGTCTCCATTATCTTGAATGTAAAAGATAAAATCAGCCATCCCTTTAGATCTTTGGGTAATTTTATCTCAGGAATGTTCAAACGCCCTAAAACCATTGTTCATAATACAGACAAGAATTCATCTAAACAAGACCATGATGAAGTTTCACTGCTTCCCCCTCTCAAAATTCCAGAACTTCCTCAAGTGGGTTTGCAATAA 576 39.93 MEEEEQRLELISHAIRRLLEDNKNKKSSDRSSVDDGDENGNPSLLRDLLSQIESLKEGTESEEFTSALDTLKTKVESCIKEEIVDEECSREDIIVKELKKLKRQNLLTHCLLSVMIVLTVVWQLSEVSIILNVKDKISHPFRSLGNFISGMFKRPKTIVHNTDKNSSKQDHDEVSLLPPLKIPELPQVGLQ* 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24242814 24243719 - Chy11G203680.1 Chy11g01788 237549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01788 191 PANTHER F17L21.9 5 190 - -
Chy11g01788 191 MobiDBLite consensus disorder prediction 21 36 - -
Chy11g01788 191 Coils Coil 1 21 - -
Chy11g01788 191 PANTHER F17L21.9 5 190 - -
Chy11g01788 191 MobiDBLite consensus disorder prediction 21 41 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01788 - - - csv:101222559 330.102
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy07g01477 Chy11g01788 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01477 Chy-Chr7:19120884 Chy11g01788 Chy-Chr11:24242814 1.23E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1265 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00203 Cam06g0006 Cec06g0222 Cco06g0218 Clacu06g0218 Cmu06g0213 Cre06g0985 . . . . . Csa04g00305 Chy11g01788 Cme11g02320 . . . . . . . . Sed07g0084 . . . . . . . . Bhi12g02459 Tan06g1520 Cmetu07g2213 . Hepe03g1108 . . . . . . . . . . . Chy07g01477 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013252 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 2 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01788 Chy_Chr11 FPKM 3.085749 1.991596 0.0 0.210725 0.32112 0.819759 0.208317 14.071454 14.233372 14.394295