Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01789 ATGATGAACGCCAGATATGATATTAATGATCTTTATCGAGAAGCACAAACACGTTGGCTGAAGCCTCCAGAAGTGCTTTTTATTTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGCAGAGATGGTCATAGCTGGAGGAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCATGTGACCACATTGTTCTGGTACACTACAGAGACATTAATGAGGGAAGGTCCGGGACGGAAAGTGTTCCACATTTGTCTCCAGCATCAGTTTCTACTTCCGGTTCCTGTTCATCCCAAAATCTTGCTTCAGAATATCAACAGACTTCATTGAGCCCAGGGTCTGTAGAAGTTACATCTGACACTGGCAACCATACTATTGAGTCAAATGGCGTGGATGGGCATTTTGAAATATCAGAAATAAAAGGTTCAAACGAACGTGATGTTTCTCAAGCGTTGAGAAGGATTGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTTCATTTTATGGTCAGGACGAAGATTCAAATTCTAACCTTATAGACTTCTATGAGAAGTCCAATGAGGATCAGTTTTCAGTGCTTCAGCATCCAGAAAATGCTATCCATGATAATAATTATACATCGTTTGAGATGCAAGATGCTGATGGAAAACATCAACATTACAATATGGCACACGAGTTTATATTCAGTGGTGAAGGAACTCAACCATGGGGTGGTGCACTTGATTCAAGTAAGACAGCCGTTCTTGAGTCTCATGATCGACATTCTCTCCCATGGAATGAAAAAGAAAAAACATCAACATCTTCTACTGTTGACAATGAACATTGCAACTGGCTGGACAGCAGAGGAAAAGCTTTTCCTATGCTTGGAAGCTGCACATCGACAGAATATTCTTCACCACTAGACACTCATGATGTTAATTCCAACTACAACATACCATTTCTTAAACAAGAACATGGAAATTCTTTTGAAGTTGATACCAATTTAATTGTTGCACAAGTGCAGAAATTTACAATCCGCCAAATAGTACCTGAGCAGGGTTATGCCACTGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTTTAGAATCTCCATGGGCTTGTATGTTTGGAGACATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGGTACTTTGTTGCGAAGCACCTCCACACCTTCCTGGGAAGGTTGCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAAGTCAGAGAGTTTGAATATAAAATGAATGTTTGCAGTCATTGCCAGTCCCATTCAACTGGAGATGCGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAATGCAGAAATCTCACAGGTTAGATACTGGATTTAGGAGCAATAGTTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTTCTAGTTGGTAGTGAAACTCCTTCTAGTACCACCGATTGGCTTTTTCAAGAATTGCTAAAAGACAAGTTGCTACTTTGGCTTTCTTCACAACAGAAAGAGAGGCACGATCTAACAGGCTGTCTTTTGTCCAAGAAAGAACAAGGCGTTATACACATGATAGCTGGCTTGGGCTATGTGTGGGCACTTAACCCAATTCTCAGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGGTGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGGAGCATCAGCTGGCGCCGTGACTGATCCTAGTTCACAAAATCCAGATGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAAGTTGCACTTACTAGTCATCTCTCATCCCTCACATTTGAAGAAAGTGAGCTTTCCAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACAGTCAATTGCATTTCAAATGGGAATCTATCTTCCGCTGAGGACTATATCCCTCTAAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCAGCCCGTATTCAATCTGCTTTCCGTGCCCATTCTTTTAGGAAGCGACAGCAGAAAGAGGCAGCCTTTGCAGCTTGTATAGATGAGTATGGAATCGATCCAAATGACATACAGGGGCTCTTCGCTATGTCAAAAATGAATTTTTCTAATCGGCGTGATTACAATGCAGCAGCGTTATCCATTCAAAAAAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTTTTATCACTACGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGAGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTCGATAAAGTTGTATTACGTTGGAGAAGGAAAGGAGTTGGCTTGAGAGGGTTTCGTAGTGAGATAGGATCCATTGATGAAAGTGAGGACGATGATATTTTAAAGGTGTTCCGCAAACAAAAAGTGGAAGGAAACATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTTAATTCTCCGGATGCTCGTCAGCAATATCATCGTATGGTTGAAGGATTTCGAGAAGCCAAGGCTGAACTCGATGGTGCAAGTAACAAATCAGCAGCATCGACCTCTCTCACCGATATTTCAGGAGTGGAAGATTGTAATCAATATCCTAAGTTTATATAG 2889 41.74 MMNARYDINDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDINEGRSGTESVPHLSPASVSTSGSCSSQNLASEYQQTSLSPGSVEVTSDTGNHTIESNGVDGHFEISEIKGSNERDVSQALRRIEEQLSLNEDSLKDIGSFYGQDEDSNSNLIDFYEKSNEDQFSVLQHPENAIHDNNYTSFEMQDADGKHQHYNMAHEFIFSGEGTQPWGGALDSSKTAVLESHDRHSLPWNEKEKTSTSSTVDNEHCNWLDSRGKAFPMLGSCTSTEYSSPLDTHDVNSNYNIPFLKQEHGNSFEVDTNLIVAQVQKFTIRQIVPEQGYATESTKVIIIGSFLCDPLESPWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVAFCITSGNREPCSEVREFEYKMNVCSHCQSHSTGDAKSPEELLLLVRLVQLLLSDSSMQKSHRLDTGFRSNSLKAGDDQWSSLIEALLVGSETPSSTTDWLFQELLKDKLLLWLSSQQKERHDLTGCLLSKKEQGVIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQNPDGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEESELSKGSAEVEAEMTVNCISNGNLSSAEDYIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLFAMSKMNFSNRRDYNAAALSIQKKYRGWKGRKEFLSLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEIGSIDESEDDDILKVFRKQKVEGNIDEAVSRVLSMVNSPDARQQYHRMVEGFREAKAELDGASNKSAASTSLTDISGVEDCNQYPKFI* 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24244590 24255554 - Chy11G203690.1 Chy11g01789 237550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01789 962 SUPERFAMILY Ankyrin repeat 595 687 IPR036770 -
Chy11g01789 962 Pfam Ankyrin repeats (3 copies) 602 685 IPR002110 GO:0005515
Chy11g01789 962 MobiDBLite consensus disorder prediction 133 174 - -
Chy11g01789 962 Gene3D - 801 848 - -
Chy11g01789 962 ProSiteProfiles IQ motif profile. 744 772 IPR000048 GO:0005515
Chy11g01789 962 Gene3D Immunoglobulins 392 485 IPR013783 -
Chy11g01789 962 ProSiteProfiles IQ motif profile. 801 830 IPR000048 GO:0005515
Chy11g01789 962 ProSiteProfiles Ankyrin repeat region circular profile. 626 652 - -
Chy11g01789 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 746 852 IPR027417 -
Chy11g01789 962 Pfam CG-1 domain 14 127 IPR005559 GO:0003677
Chy11g01789 962 Gene3D - 564 695 IPR036770 -
Chy11g01789 962 SMART iq_5 823 845 IPR000048 GO:0005515
Chy11g01789 962 SMART iq_5 800 822 IPR000048 GO:0005515
Chy11g01789 962 SMART iq_5 743 765 IPR000048 GO:0005515
Chy11g01789 962 Pfam IQ calmodulin-binding motif 826 845 IPR000048 GO:0005515
Chy11g01789 962 Pfam IQ calmodulin-binding motif 803 821 IPR000048 GO:0005515
Chy11g01789 962 ProSiteProfiles IQ motif profile. 824 848 IPR000048 GO:0005515
Chy11g01789 962 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 2 948 - -
Chy11g01789 962 Pfam IPT/TIG domain 398 475 IPR002909 -
Chy11g01789 962 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677
Chy11g01789 962 MobiDBLite consensus disorder prediction 135 174 - -
Chy11g01789 962 CDD IPT 398 482 - -
Chy11g01789 962 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 948 - -
Chy11g01789 962 SMART ANK_2a 626 655 IPR002110 GO:0005515
Chy11g01789 962 SMART CG_1_2 11 129 IPR005559 GO:0003677
Chy11g01789 962 SUPERFAMILY E set domains 398 481 IPR014756 -
Chy11g01789 962 ProSiteProfiles Ankyrin repeat profile. 626 658 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01557 Chy-Chr11:22122448 Chy11g01789 Chy-Chr11:24244590 4.31E-36 dispersed
Chy11g01789 Chy-Chr11:24244590 Chy01g01614 Chy-Chr1:22041615 7.93E-06 dispersed
Chy11g01789 Chy-Chr11:24244590 Chy01g00551 Chy-Chr1:3948107 8.18E-07 transposed
Chy11g01789 Chy-Chr11:24244590 Chy11g00741 Chy-Chr11:10086977 1.34E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18789 PF03859 CG-1 4.60E-48 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01789 K21596 - csv:101222798 1828.53