Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01789 ATGATGAACGCCAGATATGATATTAATGATCTTTATCGAGAAGCACAAACACGTTGGCTGAAGCCTCCAGAAGTGCTTTTTATTTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGCAGAGATGGTCATAGCTGGAGGAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCATGTGACCACATTGTTCTGGTACACTACAGAGACATTAATGAGGGAAGGTCCGGGACGGAAAGTGTTCCACATTTGTCTCCAGCATCAGTTTCTACTTCCGGTTCCTGTTCATCCCAAAATCTTGCTTCAGAATATCAACAGACTTCATTGAGCCCAGGGTCTGTAGAAGTTACATCTGACACTGGCAACCATACTATTGAGTCAAATGGCGTGGATGGGCATTTTGAAATATCAGAAATAAAAGGTTCAAACGAACGTGATGTTTCTCAAGCGTTGAGAAGGATTGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTTCATTTTATGGTCAGGACGAAGATTCAAATTCTAACCTTATAGACTTCTATGAGAAGTCCAATGAGGATCAGTTTTCAGTGCTTCAGCATCCAGAAAATGCTATCCATGATAATAATTATACATCGTTTGAGATGCAAGATGCTGATGGAAAACATCAACATTACAATATGGCACACGAGTTTATATTCAGTGGTGAAGGAACTCAACCATGGGGTGGTGCACTTGATTCAAGTAAGACAGCCGTTCTTGAGTCTCATGATCGACATTCTCTCCCATGGAATGAAAAAGAAAAAACATCAACATCTTCTACTGTTGACAATGAACATTGCAACTGGCTGGACAGCAGAGGAAAAGCTTTTCCTATGCTTGGAAGCTGCACATCGACAGAATATTCTTCACCACTAGACACTCATGATGTTAATTCCAACTACAACATACCATTTCTTAAACAAGAACATGGAAATTCTTTTGAAGTTGATACCAATTTAATTGTTGCACAAGTGCAGAAATTTACAATCCGCCAAATAGTACCTGAGCAGGGTTATGCCACTGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTTTAGAATCTCCATGGGCTTGTATGTTTGGAGACATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGGTACTTTGTTGCGAAGCACCTCCACACCTTCCTGGGAAGGTTGCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAAGTCAGAGAGTTTGAATATAAAATGAATGTTTGCAGTCATTGCCAGTCCCATTCAACTGGAGATGCGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAATGCAGAAATCTCACAGGTTAGATACTGGATTTAGGAGCAATAGTTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTTCTAGTTGGTAGTGAAACTCCTTCTAGTACCACCGATTGGCTTTTTCAAGAATTGCTAAAAGACAAGTTGCTACTTTGGCTTTCTTCACAACAGAAAGAGAGGCACGATCTAACAGGCTGTCTTTTGTCCAAGAAAGAACAAGGCGTTATACACATGATAGCTGGCTTGGGCTATGTGTGGGCACTTAACCCAATTCTCAGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGGTGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGGAGCATCAGCTGGCGCCGTGACTGATCCTAGTTCACAAAATCCAGATGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAAGTTGCACTTACTAGTCATCTCTCATCCCTCACATTTGAAGAAAGTGAGCTTTCCAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACAGTCAATTGCATTTCAAATGGGAATCTATCTTCCGCTGAGGACTATATCCCTCTAAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCAGCCCGTATTCAATCTGCTTTCCGTGCCCATTCTTTTAGGAAGCGACAGCAGAAAGAGGCAGCCTTTGCAGCTTGTATAGATGAGTATGGAATCGATCCAAATGACATACAGGGGCTCTTCGCTATGTCAAAAATGAATTTTTCTAATCGGCGTGATTACAATGCAGCAGCGTTATCCATTCAAAAAAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTTTTATCACTACGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGAGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTCGATAAAGTTGTATTACGTTGGAGAAGGAAAGGAGTTGGCTTGAGAGGGTTTCGTAGTGAGATAGGATCCATTGATGAAAGTGAGGACGATGATATTTTAAAGGTGTTCCGCAAACAAAAAGTGGAAGGAAACATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTTAATTCTCCGGATGCTCGTCAGCAATATCATCGTATGGTTGAAGGATTTCGAGAAGCCAAGGCTGAACTCGATGGTGCAAGTAACAAATCAGCAGCATCGACCTCTCTCACCGATATTTCAGGAGTGGAAGATTGTAATCAATATCCTAAGTTTATATAG 2889 41.74 MMNARYDINDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDINEGRSGTESVPHLSPASVSTSGSCSSQNLASEYQQTSLSPGSVEVTSDTGNHTIESNGVDGHFEISEIKGSNERDVSQALRRIEEQLSLNEDSLKDIGSFYGQDEDSNSNLIDFYEKSNEDQFSVLQHPENAIHDNNYTSFEMQDADGKHQHYNMAHEFIFSGEGTQPWGGALDSSKTAVLESHDRHSLPWNEKEKTSTSSTVDNEHCNWLDSRGKAFPMLGSCTSTEYSSPLDTHDVNSNYNIPFLKQEHGNSFEVDTNLIVAQVQKFTIRQIVPEQGYATESTKVIIIGSFLCDPLESPWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVAFCITSGNREPCSEVREFEYKMNVCSHCQSHSTGDAKSPEELLLLVRLVQLLLSDSSMQKSHRLDTGFRSNSLKAGDDQWSSLIEALLVGSETPSSTTDWLFQELLKDKLLLWLSSQQKERHDLTGCLLSKKEQGVIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQNPDGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEESELSKGSAEVEAEMTVNCISNGNLSSAEDYIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLFAMSKMNFSNRRDYNAAALSIQKKYRGWKGRKEFLSLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEIGSIDESEDDDILKVFRKQKVEGNIDEAVSRVLSMVNSPDARQQYHRMVEGFREAKAELDGASNKSAASTSLTDISGVEDCNQYPKFI* 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24244590 24255554 - Chy11G203690.1 Chy11g01789 237550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01789 962 SUPERFAMILY Ankyrin repeat 595 687 IPR036770 -
Chy11g01789 962 Pfam Ankyrin repeats (3 copies) 602 685 IPR002110 GO:0005515
Chy11g01789 962 MobiDBLite consensus disorder prediction 133 174 - -
Chy11g01789 962 Gene3D - 801 848 - -
Chy11g01789 962 ProSiteProfiles IQ motif profile. 744 772 IPR000048 GO:0005515
Chy11g01789 962 Gene3D Immunoglobulins 392 485 IPR013783 -
Chy11g01789 962 ProSiteProfiles IQ motif profile. 801 830 IPR000048 GO:0005515
Chy11g01789 962 ProSiteProfiles Ankyrin repeat region circular profile. 626 652 - -
Chy11g01789 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 746 852 IPR027417 -
Chy11g01789 962 Pfam CG-1 domain 14 127 IPR005559 GO:0003677
Chy11g01789 962 Gene3D - 564 695 IPR036770 -
Chy11g01789 962 SMART iq_5 823 845 IPR000048 GO:0005515
Chy11g01789 962 SMART iq_5 800 822 IPR000048 GO:0005515
Chy11g01789 962 SMART iq_5 743 765 IPR000048 GO:0005515
Chy11g01789 962 Pfam IQ calmodulin-binding motif 826 845 IPR000048 GO:0005515
Chy11g01789 962 Pfam IQ calmodulin-binding motif 803 821 IPR000048 GO:0005515
Chy11g01789 962 ProSiteProfiles IQ motif profile. 824 848 IPR000048 GO:0005515
Chy11g01789 962 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 2 948 - -
Chy11g01789 962 Pfam IPT/TIG domain 398 475 IPR002909 -
Chy11g01789 962 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677
Chy11g01789 962 MobiDBLite consensus disorder prediction 135 174 - -
Chy11g01789 962 CDD IPT 398 482 - -
Chy11g01789 962 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 948 - -
Chy11g01789 962 SMART ANK_2a 626 655 IPR002110 GO:0005515
Chy11g01789 962 SMART CG_1_2 11 129 IPR005559 GO:0003677
Chy11g01789 962 SUPERFAMILY E set domains 398 481 IPR014756 -
Chy11g01789 962 ProSiteProfiles Ankyrin repeat profile. 626 658 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01789 K21596 CAMTA; calmodulin-binding transcription activator - csv:101222798 1828.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01557 Chy-Chr11:22122448 Chy11g01789 Chy-Chr11:24244590 4.31E-36 dispersed
Chy11g01789 Chy-Chr11:24244590 Chy01g01614 Chy-Chr1:22041615 7.93E-06 dispersed
Chy11g01789 Chy-Chr11:24244590 Chy01g00551 Chy-Chr1:3948107 8.18E-07 transposed
Chy11g01789 Chy-Chr11:24244590 Chy11g00741 Chy-Chr11:10086977 1.34E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1270 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00202 Cam06g0008 Cec06g0221 Cco06g0217 Clacu06g0217 Cmu06g0212 Cre06g0984 . . . . . . Chy11g01789 Cme11g02321 . Blo12g00279 . . . . . . Sed09g0385 . . . . . . Cpe17g01072 . Bhi12g02457 Tan06g1519 Cmetu11g2536 . Hepe03g1109 . . . . . . . . . Lsi09g01722 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g00254 . 10 1089 CAMTA Transcription Factor Family AT5G64220 53.0 2.6e-270 928.7
Chy11g01789 . 5 933 CAMTA Transcription Factor Family AT1G67310 52.7 4.1e-257 884.8
Chy11g01557 . 34 905 CAMTA Transcription Factor Family AT3G16940 54.1 1.5e-257 885.9
Chy11g01557 . 11 627 CAMTA Transcription Factor Family AT4G16150 53.2 2.7e-191 666.0
Chy01g00254 . 10 1089 CAMTA Transcription Factor Family AT5G64220 53.0 2.6e-270 928.7
Chy11g01789 . 5 933 CAMTA Transcription Factor Family AT1G67310 52.7 4.1e-257 884.8
Chy11g01557 . 11 627 CAMTA Transcription Factor Family AT4G16150 53.2 2.7e-191 666.0
Chy11g01557 . 34 905 CAMTA Transcription Factor Family AT3G16940 54.1 1.5e-257 885.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18789 PF03859 CG-1 4.60E-48 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01789 Chy_Chr11 FPKM 2.283816 1.173882 0.0 0.210725 0.104492 0.273253 0.0 15.998859 17.676985 19.172098