Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01793 ATGGGAAGAGGGAGAGTAGAACTGAAGAGAATAGAGAACAAGATCAATAGACAAGTGACATTCGCTAAACGAAGAAATGGTCTATTGAAGAAAGCATATGAACTTTCAGTTCTATGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAATAGAGGCAAACTCTATGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACTCTAGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCTAATGTCTCCACAAGAGAAGCCTTGGAACTGAGCAGCCAGCAGGAGTATTTGAAACTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAAAGGAACCTTTTGGGAGAAGACCTTGGCCCTTTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAACTTGATATGTCACTCAAGCAAATCAGATCAACAAGGACTCAGTATATGTTAGATCAGCTCACTGATCTTCAACGTAAGGAACATCTTCTTAATGAAGCAAACAAGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTTCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAACAAGCTCAGCCACCTGGTGATGCCTTCTTCCATCCTCTAGATTGTGAACCCACCCTACAAATTGGGTATCAACCAGATCCCATAACAGTGGTAAAGTGTAAAGCGCACAGTGCGTGA 705 41.7 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLVEGYQVNALQLNQSADDMMYGRQQAQPPGDAFFHPLDCEPTLQIGYQPDPITVVKCKAHSA* 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24294112 24306051 - Chy11G203730.1 Chy11g01793 237554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01793 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy11g01793 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy11g01793 234 Coils Coil 126 146 - -
Chy11g01793 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Chy11g01793 234 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 226 - -
Chy11g01793 234 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Chy11g01793 234 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy11g01793 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Chy11g01793 234 Coils Coil 152 172 - -
Chy11g01793 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy11g01793 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy11g01793 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy11g01793 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 226 - -
Chy11g01793 234 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Chy11g01793 234 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy11g01793 234 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00724 Chy-Chr3:9696319 Chy11g01793 Chy-Chr11:24294112 2.28E-29 dispersed
Chy06g00896 Chy-Chr6:6529402 Chy11g01793 Chy-Chr11:24294112 5.01E-55 dispersed
Chy09g00023 Chy-Chr9:240684 Chy11g01793 Chy-Chr11:24294112 3.97E-41 dispersed
Chy11g01793 Chy-Chr11:24294112 Chy12g01480 Chy-Chr12:18701175 6.68E-85 dispersed
Chy12g00045 Chy-Chr12:397024 Chy11g01793 Chy-Chr11:24294112 3.44E-46 dispersed
Chy11g01792 Chy-Chr11:24271663 Chy11g01793 Chy-Chr11:24294112 3.16E-32 tandem
Chy11g01793 Chy-Chr11:24294112 Chy12g01158 Chy-Chr12:16520377 2.38E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18791 PF01486 K-box 2.70E-26 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01793 - - csv:101216798 449.129