Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g01793 | ATGGGAAGAGGGAGAGTAGAACTGAAGAGAATAGAGAACAAGATCAATAGACAAGTGACATTCGCTAAACGAAGAAATGGTCTATTGAAGAAAGCATATGAACTTTCAGTTCTATGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAATAGAGGCAAACTCTATGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACTCTAGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCTAATGTCTCCACAAGAGAAGCCTTGGAACTGAGCAGCCAGCAGGAGTATTTGAAACTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAAAGGAACCTTTTGGGAGAAGACCTTGGCCCTTTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAACTTGATATGTCACTCAAGCAAATCAGATCAACAAGGACTCAGTATATGTTAGATCAGCTCACTGATCTTCAACGTAAGGAACATCTTCTTAATGAAGCAAACAAGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTTCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAACAAGCTCAGCCACCTGGTGATGCCTTCTTCCATCCTCTAGATTGTGAACCCACCCTACAAATTGGGTATCAACCAGATCCCATAACAGTGGTAAAGTGTAAAGCGCACAGTGCGTGA | 705 | 41.7 | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLVEGYQVNALQLNQSADDMMYGRQQAQPPGDAFFHPLDCEPTLQIGYQPDPITVVKCKAHSA* | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 24294112 | 24306051 | - | Chy11G203730.1 | Chy11g01793 | 237554 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g01793 | 234 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g01793 | 234 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g01793 | 234 | Coils | Coil | 126 | 146 | - | - | |
Chy11g01793 | 234 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g01793 | 234 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG | 1 | 226 | - | - | |
Chy11g01793 | 234 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Chy11g01793 | 234 | ProSiteProfiles | K-box domain profile. | 89 | 185 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Chy11g01793 | 234 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g01793 | 234 | Coils | Coil | 152 | 172 | - | - | |
Chy11g01793 | 234 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g01793 | 234 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g01793 | 234 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g01793 | 234 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 226 | - | - | |
Chy11g01793 | 234 | SUPERFAMILY | SRF-like | 2 | 76 | IPR036879 | GO:0003677|GO:0046983 | |
Chy11g01793 | 234 | Pfam | K-box region | 91 | 173 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Chy11g01793 | 234 | Gene3D | - | 13 | 80 | IPR036879 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy03g00724 | Chy-Chr3:9696319 | Chy11g01793 | Chy-Chr11:24294112 | 2.28E-29 | dispersed | |
Chy06g00896 | Chy-Chr6:6529402 | Chy11g01793 | Chy-Chr11:24294112 | 5.01E-55 | dispersed | |
Chy09g00023 | Chy-Chr9:240684 | Chy11g01793 | Chy-Chr11:24294112 | 3.97E-41 | dispersed | |
Chy11g01793 | Chy-Chr11:24294112 | Chy12g01480 | Chy-Chr12:18701175 | 6.68E-85 | dispersed | |
Chy12g00045 | Chy-Chr12:397024 | Chy11g01793 | Chy-Chr11:24294112 | 3.44E-46 | dispersed | |
Chy11g01792 | Chy-Chr11:24271663 | Chy11g01793 | Chy-Chr11:24294112 | 3.16E-32 | tandem | |
Chy11g01793 | Chy-Chr11:24294112 | Chy12g01158 | Chy-Chr12:16520377 | 2.38E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18791 | PF01486 | K-box | 2.70E-26 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g01793 | - | - | csv:101216798 | 449.129 |