Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g01795 | ATGTATTGGGAACTCAGGGGCATTGGTAATATGGATGAAAGATCTATGGATGACATGAAAGGAACTCGAGTTTCTTTGATTGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGTGGAGCCCAAGTCCCTTCGTGTATGGTAGATGGCTGCAGTTCGGACCTTAGCAAATGCAGGGACTATCACCGCCGTCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGTGGTCAGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATAGAAAACGAAGTTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCCTTTGGTAATCAATTACTGTCTGCCAGCAGTGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAATGCGCCGCTTTGTGGTGGCAACTCACAGTTTGACTTTACTGACAGAAGAAAAAGTATGTTGCCCGGTTCGTTGTCTTCTGATTACAAAGAAAAACAACTAGCAATCTCTTGCATCCCTATAGGACTGCTTCCCAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCAACGGTGGGAATGTTCAGAAAGTGCTCGGAAACGGATCGAATCGGTTCTTCGACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCCCCCCAGCCCATTTCATCCACAGCGACGGTCTTGGCTTGGAGGGTGACCCCATTAGTTCTGGTTTAGTCTCGGACGGTAGCAGCGATGCCAACATCCGTTGCTACTCAACATTCCAGGACGGACCTGATGGATCATCTGTTGATCTATTCAGGTTTTGA | 987 | 46.61 | MYWELRGIGNMDERSMDDMKGTRVSLIESSSSRLMKRSRAPGSGAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASSDVSSSWIGMIKPENNAPLCGGNSQFDFTDRRKSMLPGSLSSDYKEKQLAISCIPIGLLPKSSDTQPFLNVGSSNGGNVQKVLGNGSNRFFDSDCALSLLSTPVEPGEINLSSMSQSNLIPPAHFIHSDGLGLEGDPISSGLVSDGSSDANIRCYSTFQDGPDGSSVDLFRF* | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 24330473 | 24332385 | - | Chy11G203750.1 | Chy11g01795 | 237556 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g01795 | 328 | ProSiteProfiles | Zinc finger SBP-type profile. | 47 | 124 | IPR004333 | GO:0003677 | |
Chy11g01795 | 328 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 | 8 | 321 | - | - | |
Chy11g01795 | 328 | Pfam | SBP domain | 50 | 123 | IPR004333 | GO:0003677 | |
Chy11g01795 | 328 | Gene3D | - | 41 | 111 | IPR036893 | GO:0003677|GO:0005634 | |
Chy11g01795 | 328 | SUPERFAMILY | SBT domain | 48 | 129 | IPR036893 | GO:0003677|GO:0005634 | |
Chy11g01795 | 328 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 8 | 321 | IPR044817 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g02404 | Chy-Chr2:27781911 | Chy11g01795 | Chy-Chr11:24330473 | 1.42E-41 | dispersed | |
Chy02g02674 | Chy-Chr2:29694970 | Chy11g01795 | Chy-Chr11:24330473 | 1.53E-49 | dispersed | |
Chy06g01539 | Chy-Chr6:17031774 | Chy11g01795 | Chy-Chr11:24330473 | 3.50E-47 | dispersed | |
Chy11g01795 | Chy-Chr11:24330473 | Chy12g01481 | Chy-Chr12:18717450 | 4.20E-38 | dispersed | |
Chy07g00438 | Chy-Chr7:3355994 | Chy11g01795 | Chy-Chr11:24330473 | 2.39E-35 | transposed | |
Chy11g01795 | Chy-Chr11:24330473 | Chy12g01157 | Chy-Chr12:16513080 | 6.69E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18792 | PF03110 | SBP | 7.40E-29 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g01795 | - | - | csv:101217032 | 666.766 |