Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01795 ATGTATTGGGAACTCAGGGGCATTGGTAATATGGATGAAAGATCTATGGATGACATGAAAGGAACTCGAGTTTCTTTGATTGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGTGGAGCCCAAGTCCCTTCGTGTATGGTAGATGGCTGCAGTTCGGACCTTAGCAAATGCAGGGACTATCACCGCCGTCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGTGGTCAGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATAGAAAACGAAGTTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCCTTTGGTAATCAATTACTGTCTGCCAGCAGTGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAATGCGCCGCTTTGTGGTGGCAACTCACAGTTTGACTTTACTGACAGAAGAAAAAGTATGTTGCCCGGTTCGTTGTCTTCTGATTACAAAGAAAAACAACTAGCAATCTCTTGCATCCCTATAGGACTGCTTCCCAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCAACGGTGGGAATGTTCAGAAAGTGCTCGGAAACGGATCGAATCGGTTCTTCGACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCCCCCCAGCCCATTTCATCCACAGCGACGGTCTTGGCTTGGAGGGTGACCCCATTAGTTCTGGTTTAGTCTCGGACGGTAGCAGCGATGCCAACATCCGTTGCTACTCAACATTCCAGGACGGACCTGATGGATCATCTGTTGATCTATTCAGGTTTTGA 987 46.61 MYWELRGIGNMDERSMDDMKGTRVSLIESSSSRLMKRSRAPGSGAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASSDVSSSWIGMIKPENNAPLCGGNSQFDFTDRRKSMLPGSLSSDYKEKQLAISCIPIGLLPKSSDTQPFLNVGSSNGGNVQKVLGNGSNRFFDSDCALSLLSTPVEPGEINLSSMSQSNLIPPAHFIHSDGLGLEGDPISSGLVSDGSSDANIRCYSTFQDGPDGSSVDLFRF* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24330473 24332385 - Chy11G203750.1 Chy11g01795 237556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01795 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
Chy11g01795 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 8 321 - -
Chy11g01795 328 Pfam SBP domain 50 123 IPR004333 GO:0003677
Chy11g01795 328 Gene3D - 41 111 IPR036893 GO:0003677|GO:0005634
Chy11g01795 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677|GO:0005634
Chy11g01795 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 8 321 IPR044817 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02404 Chy-Chr2:27781911 Chy11g01795 Chy-Chr11:24330473 1.42E-41 dispersed
Chy02g02674 Chy-Chr2:29694970 Chy11g01795 Chy-Chr11:24330473 1.53E-49 dispersed
Chy06g01539 Chy-Chr6:17031774 Chy11g01795 Chy-Chr11:24330473 3.50E-47 dispersed
Chy11g01795 Chy-Chr11:24330473 Chy12g01481 Chy-Chr12:18717450 4.20E-38 dispersed
Chy07g00438 Chy-Chr7:3355994 Chy11g01795 Chy-Chr11:24330473 2.39E-35 transposed
Chy11g01795 Chy-Chr11:24330473 Chy12g01157 Chy-Chr12:16513080 6.69E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18792 PF03110 SBP 7.40E-29 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01795 - - csv:101217032 666.766