Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01797 ATGGCGATTCCTTTTGGGAAGATCACCATTCTCGTTGGAGCTGGTATTGTTGGCTCTGTTCTGGCAAAAGAGGGACGCCTCCCATATGTACAAGATTTCGTCTCAGGTGCCTTTAAGATTGCTCTAAGGCGTATCAGTCGAGATGACTCTAGCACTTCAAAAACCAAGCCACGCAATGACTCTTTAATGGCTCAGGTAAAAAGCTTACGTGAGGAACTGCAAATGTTAGCATCAAATCGTCAGATGACAATTGTGACTACTGGCGGAAGAGGGGGTAGAAAATATGGCGTAATCATTCTTGTGGTTGTAGTAGGGTATGGAATCATTTGGATGAAGGGATGGAAACTTCCTGATATGATGTTTGCTACAAAGCGTAGTCTAGCTGATGCTTGCACTTCCGTTGCTAGGCAGCTCGAGAATGTTTACTCATCCATTGCGGCTACAAAACGGAATTTATCTTCAAAAATGGACAGTGTTGACAAAAGTTTGGATGAAACTTTGGATGTCACTACTGATACACAAGAACAGGTCTCAGAACTACGAGGTAGATCAGAAACTTTTGGCAGGGATATTAAGTCCGTTCATCATGCCGTCCAGACATTGGAAAATAAACTTTGCACCTTTGAAGGAAAGCAGGATCGAACGTATGAAGGTGTTAAGAAATTGTGTAATTATGCTATCGACTTGGAGAATAAGAGGACTGCAGAACGTACTCAGGCAATTCCTTCTGGTCCCTCTAGGCAAGTTCTTGAACTCCCTCCAACACCTTCACCAAAGTCGCAAAATCGGTCGTTGCCGATTGGCTTTTCACCAGAAGCACTGTCTCCCTCCGAGTCTAATGGTTCTTCTGACCAGGCTCAAGTTCAACGGCGATCCCTCCAAAATACTGTCTCAGACCCTGGCTTGATGTCAATAGCACCTACAGATTCAACGGCTCCATCAAGTAGCAGCCTTGATACAATGTCGAATGGGACTAGTTCATCCGAATCTACCAAAAGCGAGGCTGGGAATTCCGGTCTTTCAGGACTTGGATTTCTTACCAGAACAAGGAGTGCAATGAGCGCAGTATTCCGGCATTCTCGTTCCAGTGTTCAATCTTGA 1101 44.78 MAIPFGKITILVGAGIVGSVLAKEGRLPYVQDFVSGAFKIALRRISRDDSSTSKTKPRNDSLMAQVKSLREELQMLASNRQMTIVTTGGRGGRKYGVIILVVVVGYGIIWMKGWKLPDMMFATKRSLADACTSVARQLENVYSSIAATKRNLSSKMDSVDKSLDETLDVTTDTQEQVSELRGRSETFGRDIKSVHHAVQTLENKLCTFEGKQDRTYEGVKKLCNYAIDLENKRTAERTQAIPSGPSRQVLELPPTPSPKSQNRSLPIGFSPEALSPSESNGSSDQAQVQRRSLQNTVSDPGLMSIAPTDSTAPSSSSLDTMSNGTSSSESTKSEAGNSGLSGLGFLTRTRSAMSAVFRHSRSSVQS* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24349473 24358364 - Chy11G203770.1 Chy11g01797 237558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01797 366 Coils Coil 59 79 - -
Chy11g01797 366 Pfam Protein of unknown function (DUF1664) 91 212 IPR012458 -
Chy11g01797 366 PANTHER TRANSCRIPTION FACTOR, PUTATIVE (DUF1664)-RELATED 1 356 - -
Chy11g01797 366 MobiDBLite consensus disorder prediction 236 344 - -
Chy11g01797 366 PANTHER TRANSCRIPTION FACTOR, PUTATIVE (DUF1664)-RELATED 1 356 - -
Chy11g01797 366 MobiDBLite consensus disorder prediction 253 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01797 - - - csv:101217504 670.233
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1274 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00192 Cam06g0018 Cec06g0212 Cco06g0207 Clacu06g0210 Cmu06g0203 Cre06g0976 . . . . . . Chy11g01797 Cme11g02328 Blo02g00196 . . . Bpe14g00798 . . . Sed07g0096 . . . . . . Cpe17g01066 . Bhi12g02442 Tan06g1508 . . Hepe03g1123 . . . . . . . . . Lsi09g01732 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004739 1 2 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 7 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01797 Chy_Chr11 FPKM 17.08713 17.853125 16.787922 18.567533 18.173315 14.411393 17.961185 20.914145 20.837418 20.157955