Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01799 ATGGATTCTTCTCTCAATTCGGTTTTGGTGGAATTCAGAGCCTCTGCCAATGCTTTCCTGTCCAAATACGAGCCACTGGCTCTCGTTTTTGGCCCTCTTTTGGTCCTACTATTGGCTCGGGTGCTTCAGTCATTTCTGGATCTTGTTTACGAAGCAGGACTTAAAGCTACCTGCTTATCGTTCTTCATGGCTACGATTAAGTTAATTCCAGGGGTGAAACGTCGGATCGATTCTGAGAAGCAGAAGGTTGTGGAAAAATTACAATCCAGCGGTAATTCTAAAAGAGAAAGTTGGAGGACTGAGTTGCCAATGGCCGGCCTGGGAACTGAAGTCATTGAGAAAATGAAAAGTGAGAAACAAAACGATGTGGTTTGGCAAGGAAAATGCTCGGGTACAGTCTACATTGGAGGATCTGAATCTGAAGGTCATTTTTCTCTCTTAAACGAGGCATGTTCAATGTTTGCACATACAAATCCTTTACATTTGGATGTATTTCAAAGTGTGGTGCGGTTTGAAGCTGAAGTAGTGGCCATGACTGCTGCTATTCTTGGCAGTAAAGTGGAGGCTTCTGGAGGGCAAATCTGCGGAAACATGACGTCGGGAGGAACTGAAAGCATACTGTTGGCTGTGAAGTCAACTCGTGACTATATGAAATCCAAGAAAGGAATTAAAAAACCTGAAATGATAATACCTGAGTCTGCACATTCAGCATATGATAAGGCTGCTCATTATTTTAATATCAAGCTGTGGCGTGTCCCTGTAGACAAAGAATTCAAAGCAGATGTCAAAGCTATTCGAAAATTTATCAACAGGAATACTATCTTGATTGTTGGATCTGCGCCTGGGTTTCCTCACGGAATCATTGATCCGATTGTTGAACTTGGGGAATTAGCTTCTAGCTCTGGCATTTGTCTGCATGTTGACTTTTGTCTTGGCGGCTTTGTGTTGCCGTTTGCACGCAAGCTTGGGTACCCAATTCCACCTTGTGATTTTTCAGTTAAAGGAGTGACATCAATCTCTGTGGATGTACATAAATATGGATTAGCACCCAAAGGAACAAGCGTGGTTTTGTACAGAAATCATGAGATTAGAAAGCATCAATTTGTTGCTGTAAGTGAGTGGTCTGGTGGGCTTTACGTCTCTCCAACAATTGCTGGAAGCAGACCCGGTGGCTTGATTGCTGGGGCTTGGGCAGCAATGATGTCTTTGGGAGAAGAAGGATATTTGCAAAACACAAAAGAGATCATGGAAGTATCAAAGAGGATACATAGGGGGGTAAACGAAATTCCTGAGTTATTTGTTATCGGAAAGCCAGACATGACAATTATAGCATTTGGGTCTACTGCTCTTGACATTTTTGAAGTCAATGACATTATGTCATCAAAAGGCTGGCATTTGAATGCCTTGCAAAAGCCTAGCAGCATTCACATCTGCGTGACGCTTCAGCATGTATCGATAGTTGACGACTTTCTCCAGGACCTGCAAGAATCTGTCACCGTTGTAAAAAAGAATCCAGGTCCAATTAATGGAGGATTAGCTCCAATATATGGTGCAGCAGAGAGAATGCCAGATAGATCTATGGTTCAGGAGTTGCTCATAAGTTACATGGATGTGATTATATCTAGATCCCCAAATGAAGATGAGGTTATCAACAATGTCTCAAGCATAGGACTTTGTGATGATTTGACTAGAGTTGAGTTGTTGGAGCTTCACGATCGGATTGACGTTGAATTGTAA 1737 42.37 MDSSLNSVLVEFRASANAFLSKYEPLALVFGPLLVLLLARVLQSFLDLVYEAGLKATCLSFFMATIKLIPGVKRRIDSEKQKVVEKLQSSGNSKRESWRTELPMAGLGTEVIEKMKSEKQNDVVWQGKCSGTVYIGGSESEGHFSLLNEACSMFAHTNPLHLDVFQSVVRFEAEVVAMTAAILGSKVEASGGQICGNMTSGGTESILLAVKSTRDYMKSKKGIKKPEMIIPESAHSAYDKAAHYFNIKLWRVPVDKEFKADVKAIRKFINRNTILIVGSAPGFPHGIIDPIVELGELASSSGICLHVDFCLGGFVLPFARKLGYPIPPCDFSVKGVTSISVDVHKYGLAPKGTSVVLYRNHEIRKHQFVAVSEWSGGLYVSPTIAGSRPGGLIAGAWAAMMSLGEEGYLQNTKEIMEVSKRIHRGVNEIPELFVIGKPDMTIIAFGSTALDIFEVNDIMSSKGWHLNALQKPSSIHICVTLQHVSIVDDFLQDLQESVTVVKKNPGPINGGLAPIYGAAERMPDRSMVQELLISYMDVIISRSPNEDEVINNVSSIGLCDDLTRVELLELHDRIDVEL* 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24366657 24372982 + Chy11G203790.1 Chy11g01799 237560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01799 578 Gene3D - 101 539 - -
Chy11g01799 578 PANTHER SPHINGOSINE-1-PHOSPHATE LYASE 1 20 540 - -
Chy11g01799 578 SUPERFAMILY PLP-dependent transferases 101 503 IPR015424 -
Chy11g01799 578 Gene3D - 137 404 IPR015421 GO:0003824
Chy11g01799 578 Pfam Pyridoxal-dependent decarboxylase conserved domain 145 445 IPR002129 GO:0016830|GO:0019752|GO:0030170
Chy11g01799 578 Gene3D Aspartate Aminotransferase, domain 1 109 503 IPR015422 GO:0003824
Chy11g01799 578 PANTHER - 20 540 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01799 K01634 SGPL1, DPL1; sphinganine-1-phosphate aldolase [EC:4.1.2.27] - csv:101217975 1033.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01799 Chy-Chr11:24366657 Chy12g01583 Chy-Chr12:19343793 5.63E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1276 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00190 Cam06g0020 Cec06g0209 Cco06g0204 Clacu06g0207 Cmu06g0200 Cre06g0974 . . . . . . Chy11g01799 Cme11g02330 . . . . . . . . . . . . . . . Cpe17g01064 . Bhi12g02438 Tan06g1502 . . . . . . . . . . . . Lsi09g01734 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007917 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01799 Chy_Chr11 FPKM 12.606519 11.93155 9.612707 8.724215 0.305955 0.947768 0.602926 3.642185 3.292304 3.592355