Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01805 ATGGGGTGGGTCGAGTTTGAAGGAAAGGAGAGATATAACGATGTGGTTGTGCCCACGTGGAGGCTTAATGACTTTAATAAGCATGCATTTTTAGGATTAGTAGTTGAAATTAGAATATTTGTATACTTTTTTGTTGTTTGGCTACGGAAAAAAAAAACAGGAGTAATAAGTGCAGAAATTGACAAGGAAGTTCCTGAACTGATAACGGTAAAGGGAGTTTTTGAAGTGAAAAAGCTTTTGGCTCACATCCGAAGAGGAGTCGAGAAAATTGCCACGGGTCAAAATCAAAATGGGAATAGAAAGCAAGAAGAAGAGAAGGGAAAGGGAAAAAAAGAAGAACAGAAAAAGATAACAGAAGTTGTGGTTAAAGTTTATATGCATTGTGAAGGCTGCAAACATAAACTCTCTAAATGCTTGAAAGCTTCTCGCCATGGTGTGGAGGAAGTGGCAGCTGATATGGAAAATAAAAAAGTAGTAGTAAAAGGAAAAGATCTAAACCCAAAGAAAATAATGGAAGAAATTACGAAAAAATACTCAAAAAATGTGGAACTTATTTCTCCCAAGGAACTGCCTGATACTTCCAAACAAAACAAACCTGACCCTAGAAAGGAAGAGGTTCAAATGAAGACTGTGGAACTAAAAATGAACATGCATTGTGAAGGCTGTGAAAATGACATCAAACAAGCCATTGGAAAAATGGAAGGAGTAATGAGAGTGGAAACAGATAGAGAGAGATCAAAAGTGATAGTGAAGGGAATGATTGATCCTCCAAAGCTAATGGAATGCATTAAAAAGAGAATGGGAAAGAAAGTTGAGATTTTTAATAAGAAATCGGAAGACAAATCAAGCAACAACAAAGATTCAAATGTTCAACAGAAATTGGATCATTTTGCATTTAAATATCCTCCTCAATATTCCTTGCTTCATATTTACCCCAATCAAACTTTTAGTGATGATAATGTATTTTCTTGTTCTATTATGTAA 984 35.16 MGWVEFEGKERYNDVVVPTWRLNDFNKHAFLGLVVEIRIFVYFFVVWLRKKKTGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATGQNQNGNRKQEEEKGKGKKEEQKKITEVVVKVYMHCEGCKHKLSKCLKASRHGVEEVAADMENKKVVVKGKDLNPKKIMEEITKKYSKNVELISPKELPDTSKQNKPDPRKEEVQMKTVELKMNMHCEGCENDIKQAIGKMEGVMRVETDRERSKVIVKGMIDPPKLMECIKKRMGKKVEIFNKKSEDKSSNNKDSNVQQKLDHFAFKYPPQYSLLHIYPNQTFSDDNVFSCSIM* 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24403538 24408029 + Chy11G203850.1 Chy11g01805 237566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01805 327 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 93 327 IPR044577 GO:0046872
Chy11g01805 327 SUPERFAMILY HMA, heavy metal-associated domain 207 272 IPR036163 GO:0046872
Chy11g01805 327 ProSiteProfiles Heavy-metal-associated domain profile. 126 176 IPR006121 GO:0046872
Chy11g01805 327 ProSiteProfiles Heavy-metal-associated domain profile. 216 265 IPR006121 GO:0046872
Chy11g01805 327 SUPERFAMILY HMA, heavy metal-associated domain 120 176 IPR036163 GO:0046872
Chy11g01805 327 Gene3D - 116 191 - -
Chy11g01805 327 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 8 93 327 - -
Chy11g01805 327 CDD HMA 126 177 IPR006121 GO:0046872
Chy11g01805 327 CDD HMA 217 272 IPR006121 GO:0046872
Chy11g01805 327 Pfam Heavy-metal-associated domain 122 177 IPR006121 GO:0046872
Chy11g01805 327 Pfam Heavy-metal-associated domain 216 269 IPR006121 GO:0046872
Chy11g01805 327 MobiDBLite consensus disorder prediction 91 112 - -
Chy11g01805 327 Gene3D - 205 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01805 - - - csv:105435985 427.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02675 Chy-Chr2:29700986 Chy11g01805 Chy-Chr11:24403538 2.97E-30 dispersed
Chy11g01805 Chy-Chr11:24403538 Chy12g00820 Chy-Chr12:13340162 7.11E-21 dispersed
Chy11g01458 Chy-Chr11:21356751 Chy11g01805 Chy-Chr11:24403538 2.94E-06 transposed
Chy11g01805 Chy-Chr11:24403538 Chy12g01155 Chy-Chr12:16478499 8.20E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1297 Blo01g00171 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00185 Cam06g0026 Cec06g0203 Cco06g0198 Clacu06g0202 Cmu06g0195 Cre06g0968 . . . . . . Chy11g01805 Cme11g02338 . . . . . . . . Sed07g0107 . . . . . . . . Bhi12g02426 Tan06g1492 Cmetu11g2271 . Hepe03g1138 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012885 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01805 Chy_Chr11 FPKM 9.379199 13.75949 55.057396 54.503521 8.883895 9.443384 8.769827 1.614527 0.898692 1.037841