Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01810 ATGACAAACGAGTATGTTACACTTCCAGGATATAAAGAATACTGTTTGTACTTTGGATTTGGATTAGGGTTTAGTTCTAAATCTAACGAGTACAAGTTAGCAAGAATTTTCTTAGTGAAAAATACTTGCGGCCTTGAAATTTTAACTTTAGGAAAAAGTAATGAATGGAGGCATGTTAGTTATTTGCCAATTTTGTATATCGATCAAGAAGATGGTATTTATTTCAACGGAGTACTTTATTGGATTTGCATAGACGAAGAGAAGAAAACCAAAATGCTTTGTTTGGATGTTGAAGAAGAAAGTTTTAGCATCATTGATATTCCAAAGTTAGCTAATTCTGCTGTTGTTAATGCTTTTAACGACGGGATTTATGTATCAATCATTGACGAACACGAAGAACAAGTTGACGAACATGACAAACAAGTTGAAGTGTGGAAGTTGCAAAGTTGTGCATCAAATGGCTTATGGACGTTATGGTTTGCGGTCGACATATCAGCATGCATGCGGGTTACCGTTGATAATGATTCCAGCAGAAAAGCTACTCTGATTAAGGTTGATAGTGCTAATAAGCGAGGGAGTTTGCTGGAAGTGGTTCAGGTTCTTAATGATTTGAATCTCATAATTAGACGAGCTTACATTTCTTCTGACGGCGAATGGTTTATGGATGTGTTTCATGTAACGGATCAACGTGGGAATAAGCTCTCTGAAAATGATGTTGCTGAGCGCATTCAACAGTCACTTGGGCCGAGGGCTCGGAGCTTCAGGTCATTGAGGAGATCGGTTGGTGTTCAAGCTGCCGAGGAACATACAACCATTGAATTGACTGGAAGAGATAGGCCTGGTTTGCTCTCTGAGGTTTTTGCTGTTCTAGCAGACCTCAAATGCAATGTGGTAGCTGCAGAAGTTTGGACTCATAATTCAAGAATGGCTTCTGTTGTCTACATCACCGACGAGGCTTCTGGGTTTCCAATCGATGATCCTGATCGGCTTGGTAAGATAAAACAGCTTCTCCTCTTCGTATTAAAGGGGGATCGAGATAAGAGGAGTGCCAACACTGCTGTTTCGGTGGGTTCTACTCACAAGGAAAGGAGGCTGCACCAAATGATGTATGCGGACCGCGATTACGATCAAGATGATTTGGACTGTGGCTCGACAAGTGAACGGAGAAAACCCCTTGTGACTGTCGAGAATTGTGCTGATAAGGGATATACCGTTGTGAACTTGAGGTCTCCGGATCGTCCAAAGTTGCTGTTTGATACAGTTTGCACACTAACAGACATGCAGTATGTTGTGTACCATGCTACTGTCATTGCTGAAGGACCAGAGGCTACTCAGGAGTATTATATCCGTCATATGGATGGAAGTCCTATTAGTTCTGAAGCAGAGAGGCAAAGAGTAATCCATTGCTTAGAGGCTGCCATTCGAAGACGAACATCCGAGGGTATAAGATTAGAACTTTGCAGCGATGACAGGGCTGGACTTCTTTCCGATGTAACTCGAATCTTTAGAGAAAACGGTCTTTCAGTCACTCGAGCTGAAGTTACCACACGAGGTACTCAAGCTGTTAATGTGTTCTATGTCACTGATGCATCTGGGAATCCAGTGAAGAGTGAGATGATTGAAGCAGTTCGAAAAGAAATCGGTCTCACAGTACTGTGTGTCAAAGACGACGAATTCTGCATGAAATCTCCATCGCCAGAAAGCAGTAGATTTTCGCTCGGAAATCTCTTTCGATCTAGATCAGAAAAGTTTCTTTACAATTTGGGGTTGATAAAGTCATGTTCTTGA 1788 41.72 MTNEYVTLPGYKEYCLYFGFGLGFSSKSNEYKLARIFLVKNTCGLEILTLGKSNEWRHVSYLPILYIDQEDGIYFNGVLYWICIDEEKKTKMLCLDVEEESFSIIDIPKLANSAVVNAFNDGIYVSIIDEHEEQVDEHDKQVEVWKLQSCASNGLWTLWFAVDISACMRVTVDNDSSRKATLIKVDSANKRGSLLEVVQVLNDLNLIIRRAYISSDGEWFMDVFHVTDQRGNKLSENDVAERIQQSLGPRARSFRSLRRSVGVQAAEEHTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDEASGFPIDDPDRLGKIKQLLLFVLKGDRDKRSANTAVSVGSTHKERRLHQMMYADRDYDQDDLDCGSTSERRKPLVTVENCADKGYTVVNLRSPDRPKLLFDTVCTLTDMQYVVYHATVIAEGPEATQEYYIRHMDGSPISSEAERQRVIHCLEAAIRRRTSEGIRLELCSDDRAGLLSDVTRIFRENGLSVTRAEVTTRGTQAVNVFYVTDASGNPVKSEMIEAVRKEIGLTVLCVKDDEFCMKSPSPESSRFSLGNLFRSRSEKFLYNLGLIKSCS* 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24434723 24447011 + Chy11G203900.1 Chy11g01810 237571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01810 595 SUPERFAMILY ACT-like 479 547 IPR045865 -
Chy11g01810 595 CDD ACT_ACR_3 403 477 - -
Chy11g01810 595 CDD ACT_ACR_4 481 552 - -
Chy11g01810 595 SUPERFAMILY ACT-like 267 337 IPR045865 -
Chy11g01810 595 PANTHER OS08G0515400 PROTEIN 168 593 - -
Chy11g01810 595 Gene3D - 480 556 - -
Chy11g01810 595 Gene3D - 265 337 - -
Chy11g01810 595 ProSiteProfiles ACT domain profile. 483 562 IPR002912 -
Chy11g01810 595 CDD ACT_ACR_2 270 343 - -
Chy11g01810 595 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 168 593 IPR040217 -
Chy11g01810 595 SUPERFAMILY ACT-like 178 249 IPR045865 -
Chy11g01810 595 TIGRFAM F_box_assoc_1: F-box protein interaction domain 20 164 IPR017451 -
Chy11g01810 595 ProSiteProfiles ACT domain profile. 182 262 IPR002912 -
Chy11g01810 595 Coils Coil 128 148 - -
Chy11g01810 595 Pfam ACT domain 270 334 IPR002912 -
Chy11g01810 595 Pfam ACT domain 484 545 IPR002912 -
Chy11g01810 595 ProSiteProfiles ACT domain profile. 271 348 IPR002912 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01810 - - - csv:101218687 825.083
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy07g01484 Chy11g01810 CCT
Chy07g01484 Chy11g01810 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01484 Chy-Chr7:19165589 Chy11g01810 Chy-Chr11:24434723 1.60E-09 dispersed
Chy09g00155 Chy-Chr9:1317719 Chy11g01810 Chy-Chr11:24434723 3.17E-08 dispersed
Chy09g00161 Chy-Chr9:1398560 Chy11g01810 Chy-Chr11:24434723 1.11E-10 dispersed
Chy09g01144 Chy-Chr9:13685544 Chy11g01810 Chy-Chr11:24434723 1.95E-09 dispersed
Chy11g01810 Chy-Chr11:24434723 Chy06g01994 Chy-Chr6:23912670 1.11E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1301 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00179 Cam06g0032 Cec06g0198 Cco06g0193 Clacu06g0195 Cmu06g0189 Cre06g0961 . . . . . Csa04g00296 Chy11g01810 Cme11g02343 . Blo12g00284 . . . . . . Sed12g0612 . . . . . . Cpe17g00924 Cpe03g01219 Bhi12g02421 Tan06g1481 Cmetu07g0215 . . . . . . . . . . . Lsi09g01746 . Chy07g01484 Cme07g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001695 2 3 2 3 2 2 3 2 2 2 2 2 3 3 2 3 2 2 3 2 1 2 2 2 2 2 2 6 3 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01810 Chy_Chr11 FPKM 33.917294 34.634933 16.907629 16.718292 15.71146 16.695454 15.23769 33.307472 33.081505 34.045799