Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01811 ATGGCGTCTTCTCTCCCTACTACGCCTCTGGTTGCCTTCGCTTCTGGTTCCGATACCAAAGCTTCAGGTCCCTCTAATTCGGTTAAGCTTCATAGGCTTCAATTCCCGTCCTCCTCCAGTTTTCTATCCGGTTCCTTGCACTTTCCTTCTCTCACAACTTCTTTGAACCCCTTGTCTTCGAGGATTGTTGTTCGTAGCTCCGTCCGAGCTAGTGCTGAGGTACCTCCTTTACAAGCGAAAGTTACAAACAAGGTGTATTTTGATGTGAGCATTGGTAATCCAGTAGGGAAGCTTGCTGGGAGGATTGTGATTGGGTTATTTGGGGATGATGTCCCCAAAACGGCAGAGAATTTCCGTTCTCTTTGCACAGGAGAGAAGGGCTTTGGATTCAAAGGTTCTGTCTTTCATCGTGTAATCGAGGATTTCATGATACAAGGGGGTGATTTTGAGAAGGGAAATGGAACTGGGGGCAAAAGCATATATGGCCGTACATTTAAAGATGAAAACTTCAATTTGAGTCATACTGGACCCGGAATTGTCAGCATGGCAAATGCAGGTCCAAATACTAATGGAAGTCAATTTTTCATATGCACTGTCAAGACACAATGGCTGGATCTGAGACATGTAGTTTTTGGGCAAGTCTTGGAAGGGTTTGAGATAGTAAAGCTAATTGAGTCGCAAGAAACAGACCGTGCTGACCGGCCGTTGAAGAAGGTTGTCATCAGCGACTGTGGTGAGCTTCCAGTGGCCTAA 753 45.82 MASSLPTTPLVAFASGSDTKASGPSNSVKLHRLQFPSSSSFLSGSLHFPSLTTSLNPLSSRIVVRSSVRASAEVPPLQAKVTNKVYFDVSIGNPVGKLAGRIVIGLFGDDVPKTAENFRSLCTGEKGFGFKGSVFHRVIEDFMIQGGDFEKGNGTGGKSIYGRTFKDENFNLSHTGPGIVSMANAGPNTNGSQFFICTVKTQWLDLRHVVFGQVLEGFEIVKLIESQETDRADRPLKKVVISDCGELPVA* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24451805 24456267 - Chy11G203910.1 Chy11g01811 237572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01811 250 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 5, CHLOROPLASTIC 29 247 - -
Chy11g01811 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 147 IPR002130 GO:0000413|GO:0003755
Chy11g01811 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 106 121 IPR002130 GO:0000413|GO:0003755
Chy11g01811 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 206 221 IPR002130 GO:0000413|GO:0003755
Chy11g01811 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 178 193 IPR002130 GO:0000413|GO:0003755
Chy11g01811 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 193 205 IPR002130 GO:0000413|GO:0003755
Chy11g01811 250 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 130 147 IPR020892 GO:0003755|GO:0006457
Chy11g01811 250 SUPERFAMILY Cyclophilin-like 79 247 IPR029000 -
Chy11g01811 250 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 99 245 IPR002130 GO:0000413|GO:0003755
Chy11g01811 250 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 96 246 IPR002130 GO:0000413|GO:0003755
Chy11g01811 250 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 29 247 - -
Chy11g01811 250 Gene3D - 71 250 IPR029000 -
Chy11g01811 250 CDD cyclophilin_ABH_like 84 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01811 K03768 PPIB, ppiB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] - csv:101218923 476.092
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01250 Chy-Chr5:16881209 Chy11g01811 Chy-Chr11:24451805 1.61E-22 dispersed
Chy09g00430 Chy-Chr9:3822261 Chy11g01811 Chy-Chr11:24451805 9.77E-86 dispersed
Chy11g00269 Chy-Chr11:2494595 Chy11g01811 Chy-Chr11:24451805 1.65E-58 dispersed
Chy11g01811 Chy-Chr11:24451805 Chy01g01543 Chy-Chr1:21256980 3.62E-55 dispersed
Chy11g01811 Chy-Chr11:24451805 Chy11g01353 Chy-Chr11:19796162 1.46E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1302 . . . . . . . Bma15g00278 . . . . . . . . . . . . . . . . Cla06g00178 Cam06g0033 Cec06g0197 Cco06g0192 Clacu06g0194 Cmu06g0188 Cre06g0960 . . . . Lsi04g00730 . Chy11g01811 Cme11g02344 Blo06g00788 Blo12g00285 . . . . . . Sed09g0360 . . . . . . . . Bhi12g02419 Tan06g1479 Cmetu11g1517 . Hepe03g1142 . . . . . . . . . Lsi09g01747 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009740 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01811 Chy_Chr11 FPKM 17.558447 18.499453 15.936489 15.129302 23.632305 21.743601 23.75897 15.000519 14.848366 15.482307