Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01812 ATGTCCTTATTCGTTGAAGCTTCTGGAGGGAATGATGAGGAGAAGGTGCTCTCGGGTTTCCTTGATGAGTCTAAAGACTCTGTGGCTTCAGAGAACAGCATACCTTTGTCCCCTCAATGGCTATATGCCAAACCAAGTGAAACTAAGGAAGTGCGTGCTCCAACACCAGTGTCTCTTGCTAACTCAACTGATCTCAATCAGAAAGAGGGTTGGCGCCCTGATGGGTCAGAGGACAAGAAGGATTGGAGGAAGAGTACTTCTGAAAATGAAAGTGGCCGCCGTTGGAGAGAGGAAGAGCGAGAAACTGGCTTACTTAGTGGTCGCCGCAGGAAAACTGAGAGACGCATGGATAACATGTCAACTAAGGAGACAATTGAGGGTAGAGTCCTCCCTAATTCAGACAGATGGCATGATGGTCGCACTTCTGGGCATGATAGTCGTACTTCTGGTCATGACAGTCGTACTTCTGGACATGATAACCGTACTTCTGGGCATGACAGTCGTACTTCTAGTCATGATGCACGACGTGACAACAAATGGACGTTGAGATGGGGACCCGATGACAAAGAAAAGGAATCACGGATGGAAAAGCGATCGGATGCTGATAAGGAAGATGTTCGCAGTGACAGTCAATCAGTGAGTTGCAATCGCCCTGCTTCTGAGCGTGACTCTGAATCGCGTGATAAATGGAGGCCTCGCCATAGGATGGAAAGCCATTCTGTTGGTTCAACTTCCTTTCGCGCTGCACCTGGTTTTTCACTTGAGAGAGGGCGGGGAGATGGGGGGTCTAATTTGGGATTTACAATTGGAAGAGGAAGAGGAAATACCATTGGGAGATCGTCTACTGGTCTCATTGGAGTACCACACTTGGATAAGATTGAAAATGTTCCTGGGAAACCAAGATACTCAACTCATGCTTTTTGTTACCCTAGGGGTAAGCTTCTCGACATATATAGGAGGCAGAAATCTGATCCATCGTTCTCGGATATGCCTGATGATATGGAAGAATTGCAGCCTTTGACTCAACCTAGTGTTGTAGAACCATTGGCTTTTGTTTCTCCGGATGCTGAAGAGGAGAGTACCCTTGGTGACATATGGAAGGGGAAAATCACCAGTAGCGGGGTTGTTTACAATTCACATACGAAGGGAAAGCTTACTGAATCTGTTTTAGGAGATTTAGACTCCGTAGATAGATATCAGGCTGCGCTGGATTTAACTTTAGAGTCCGAGAATGTATCAGAAACTGCGAATGAAGATATTCCTGATGTGGGTCATGAAGTTACAAACGATGAAGCATTCCAAGATGCCATTGACGGGAGCATTTGGAGTCATCCTTCAATGAGAGATGCCCTAGATGGAAAATATGTCAGCCATAAGGAAGAGGAAAAAAGGTCTAGTGCCATTTCTATGCCGGACTCTCGTGGATTGGCCCACACAGTTTCTACAGCAGTCTCCCTACGTGTGATGGAGATTGGCAGTGGGCACCCTGGTACTAAGCTAAATTCTGGTGTGAATGGGCGAGCAGATTCTGATCATAAAAGGCCTCAGAACTTTGATGAAATTGAGTTTGCCAATTCGTTTGATGCCAGATCCAAGCTTTCTGATGATCCTAGTTCTATTTTCTTTATTCCCTTCTCTGAGCAAAATCCAAATAAAAGTTCTGACGTGAGATCTGAGGAGCTGAGTTTGTTCTATCTTGATCCTCAAGGGGTTATACAGGGGCCATTTATCGGGGCTGACATCATCTTGTGGTATGAACAAGGTTTCTTTGGGTTAGACCTGCCTGTTCGGTTGGCAGATGCCCCTGAGTCCCCATTTTGTGAGCTAGGGGAGGTTATGCCACATTTGAAAGTTAGGGAGGGAAGTGTTGATTGTGCTGATGTGAAATCTCTTTCAGGCCAGTCTGGTGCCTCAGGAGGAATAATGGAGACCAGTTTACCTTCTAAGCATCCGGCACTTGATATGAATGATGCATCTACAACAAATGAGGTTCATCGAACACTTGCTGAACTACATGGCCTGTCCAATCAACACATAGCATCTGGAATGTCTGAAACTGAATCACCATTTCAACTACATGCCAAGGGTCAAAGCTTTCATGATGTTGTTGCTCAGGATGAAGAAATTGTGTTTTCTGGAAGACCTGGAAACGATGGTTACCAATTTCCCAACTCTCCTGGGGTGCTGCCTATGGTGAATTCTATCAGCCAGCCTTCTCTTTTGAATGAGTTAAGTGATCGCAACCTGCCTGTTCAGAATGAAAATAAGTTGCACCCTTTTGGATTGCTGTGGTCTGAGCTGGAAGGTACAAATACGAAACCAGTTGAAGTCACAAATTCGAAACATACCAAGTCAGTTAATAACATGCCTTCAAGCATGGTAAGAACCGCACCGTTAGTTGGGAAGCCAGAAGTATCTCTTAATGCAGAGACTTGGCTTGATGTTTATAGAAGAAGTATGCATTCTGACCAGGGTGTATACCAGGAGGCCAATGTTGCTCATTCCTTACCACATATAGAACAAGAATCTAATAGGTTTGATTTGGCAGATCAACTCATGTCTCATCAATATCATCAGGCACTTCAACAGCGGAATTTATTATCTCACACTAACGAAGCTACTTTAGATCATCATATGCAACAACAGAATCTTATTCACCAGCAGCTGTTGGCTAATAGAAATACACCCGATCTTGATCATTTCTTGAACTTGCAGATGCAACAGCAACAACAACGGCAGCTGCAGTTACAGCATCAGTTACAGCAGCAGCAGTTGCAGCAGCAGCAAAAACTTTTGCAGGAGCAACATCAGTCTCAAGTCCAGCAGGCACTGCTTGAACAGTTGTTGCGTCGACAAATGCATGATTCAGGCCTTGGGCAGTCACGTATTGATCCAATTAGAGCCAATAATGCTCTTGATCAGGTGTTAATGGAGCAACACCTTTTACATGAGCTACATCAGCAACAATCTCATCATCAACAAAGATCTGTTGATCCATCTTTCGAGCAGCTTATCAAAGCGAAGTTTGGTCACTTGCCACCACACCAAGAACAAAGAGATTTGTCTGAATTATTATCTCGGGTTCAGCATGGGCACATTCAATCTTTGGATAATCAACTTGCCCACCAGGATGTGCTACAGTCGAGACAGTTGTCTATGGCCTTAAGGCAGAGGGCCAGTATGGAGGACAAGAGACATGCTTGTGGTCCTATCTGGCCTGAGGATGAGGCTGATCAGCAGTTTTTCAGAGGACATGCTGGCACACAACGTTTACCAACTTCAGGGTTTGAATTATACCAGCATCAACAGAGGCAAGCTCATGCAGACCAGCTGAATCACCTTGAGCACAACCTTTCCTTTCAAGATCGGTTTAGGCTAGGTCTTTATGAGCCTGCTTCACTTCCGCTCGAGAGATCAATATCCTATCCTGATGTTGCTCAGGGGATGAATCTGGATGTAGTTAATGCCATGGCTCGTGCTCGGGCTTTAGAATTGCAAGAATCCAGTGCACATAATCCACCTGGTGGTCAACTGGTGGGGCAATATGCACCCGGTGCCATTCCACAGAATCATCATCACTCTCTAGTCAGTAATCAGTTCCATGTTTCACATTTTGATGGAACTGAAGGCAACTGGTCTGAGAAAAATGAGCGTATTGGAAATGAATGGATGGAATCTCGGATGCAACAAAGGCATATCAATATGAATGCTGAGCAACAAAAAAGGGAGTTGGAGGCTAAAATGATTTCTGAAGATACAACTTTATGGATGTCAGATGGACTTAATGATGAGAAGTCAAAGCAGTTATTAATGGACCTACTCAATCAGAAATCTGTTCATCAACCCACCGAACCCCTGGATGTAGGAAGTGGAGCATCTTTCAATAGAGGATCATCTGGCCTCTATTCTGGATCAGGCTCTCTTGAACAATCGTTCATTCTTCATTCAGGCAAGGAAAGAGGAATGAACAACACATTGCCGGTAGGGTCTTATGGTTCTAATGCTTATGAACCACTGCAAGATGAGCATCCTGGCAGCTTGAGCTTGACAAGCAATGAGAAGGTCCCATACAGGTCGGATTCTGTATCTGCTGTCAAGGGAGCATCAATTTTGGCTGGTCTTAAAGCCAATGGTGCGATTAACAGCTCTAGTTCTAGCATGGCTGCCGCTGGTAACCTTTCTATGAATAGAGACGTCTTAGAGGTGGAGGGTAGGGCACGAGGATTGAAAGGTGAGGGTTTGGTGAAAACTCAAGCTTTTCAAATTCAAGAAAGCATGCTTGACCAAGTGGCATCTGCTGATCGTGGGGAATTTGCAATGGATACTCATACCCTTAGTCGGCATTCATCTCTTGGTTCTGCTGGCTTTCACAATGAAAAGATTGCTAATACTTTTCCAGAAGAGGTTGCTAAAGACCCGGTGACCATTCACAACAAAGATAATACTTCATTGAAACGCCCTCCTGTGTCACGCACTTCGACATCCCAGGATGGATTGTCTGTCCTGATTCCAGATCCGGTTGTTAGAGGGAAGAACTCAGATGGTGGAAGACCGGACCCAACTAGTATTTTGGTGAACCAAGAAAACATGGCAGCTATAAAGAAAGAGATGCGTTTCCGACGCTCTTCTTCTTGTAGTGACAGCGACGTGTCAGAGACTTCTTTTATCGATATGCTGAAGAAGACAGCTCCACAAGAATCCCATTTGACAACGGCGGGAGTTCCAGAGCCATCTGATGGAATGCAGGGAGGTAAAGGTGGGAAAAAGAAGGGGAAGAAGGGGAGACAGATAGATCCCGCTCTACTCGGATTCAAAGTCACCAGCAACCGAATTATGATGGGTGAAATCCAACGCTTAGACGATTGA 4866 45.05 MSLFVEASGGNDEEKVLSGFLDESKDSVASENSIPLSPQWLYAKPSETKEVRAPTPVSLANSTDLNQKEGWRPDGSEDKKDWRKSTSENESGRRWREEERETGLLSGRRRKTERRMDNMSTKETIEGRVLPNSDRWHDGRTSGHDSRTSGHDSRTSGHDNRTSGHDSRTSSHDARRDNKWTLRWGPDDKEKESRMEKRSDADKEDVRSDSQSVSCNRPASERDSESRDKWRPRHRMESHSVGSTSFRAAPGFSLERGRGDGGSNLGFTIGRGRGNTIGRSSTGLIGVPHLDKIENVPGKPRYSTHAFCYPRGKLLDIYRRQKSDPSFSDMPDDMEELQPLTQPSVVEPLAFVSPDAEEESTLGDIWKGKITSSGVVYNSHTKGKLTESVLGDLDSVDRYQAALDLTLESENVSETANEDIPDVGHEVTNDEAFQDAIDGSIWSHPSMRDALDGKYVSHKEEEKRSSAISMPDSRGLAHTVSTAVSLRVMEIGSGHPGTKLNSGVNGRADSDHKRPQNFDEIEFANSFDARSKLSDDPSSIFFIPFSEQNPNKSSDVRSEELSLFYLDPQGVIQGPFIGADIILWYEQGFFGLDLPVRLADAPESPFCELGEVMPHLKVREGSVDCADVKSLSGQSGASGGIMETSLPSKHPALDMNDASTTNEVHRTLAELHGLSNQHIASGMSETESPFQLHAKGQSFHDVVAQDEEIVFSGRPGNDGYQFPNSPGVLPMVNSISQPSLLNELSDRNLPVQNENKLHPFGLLWSELEGTNTKPVEVTNSKHTKSVNNMPSSMVRTAPLVGKPEVSLNAETWLDVYRRSMHSDQGVYQEANVAHSLPHIEQESNRFDLADQLMSHQYHQALQQRNLLSHTNEATLDHHMQQQNLIHQQLLANRNTPDLDHFLNLQMQQQQQRQLQLQHQLQQQQLQQQQKLLQEQHQSQVQQALLEQLLRRQMHDSGLGQSRIDPIRANNALDQVLMEQHLLHELHQQQSHHQQRSVDPSFEQLIKAKFGHLPPHQEQRDLSELLSRVQHGHIQSLDNQLAHQDVLQSRQLSMALRQRASMEDKRHACGPIWPEDEADQQFFRGHAGTQRLPTSGFELYQHQQRQAHADQLNHLEHNLSFQDRFRLGLYEPASLPLERSISYPDVAQGMNLDVVNAMARARALELQESSAHNPPGGQLVGQYAPGAIPQNHHHSLVSNQFHVSHFDGTEGNWSEKNERIGNEWMESRMQQRHINMNAEQQKRELEAKMISEDTTLWMSDGLNDEKSKQLLMDLLNQKSVHQPTEPLDVGSGASFNRGSSGLYSGSGSLEQSFILHSGKERGMNNTLPVGSYGSNAYEPLQDEHPGSLSLTSNEKVPYRSDSVSAVKGASILAGLKANGAINSSSSSMAAAGNLSMNRDVLEVEGRARGLKGEGLVKTQAFQIQESMLDQVASADRGEFAMDTHTLSRHSSLGSAGFHNEKIANTFPEEVAKDPVTIHNKDNTSLKRPPVSRTSTSQDGLSVLIPDPVVRGKNSDGGRPDPTSILVNQENMAAIKKEMRFRRSSSCSDSDVSETSFIDMLKKTAPQESHLTTAGVPEPSDGMQGGKGGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQRLDD* 1622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24457203 24464691 - Chy11G203920.1 Chy11g01812 237573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01812 1621 Coils Coil 1227 1254 - -
Chy11g01812 1621 SMART gyf_5 561 615 IPR003169 GO:0005515
Chy11g01812 1621 MobiDBLite consensus disorder prediction 1324 1353 - -
Chy11g01812 1621 MobiDBLite consensus disorder prediction 70 210 - -
Chy11g01812 1621 SUPERFAMILY GYF domain 557 616 IPR035445 -
Chy11g01812 1621 MobiDBLite consensus disorder prediction 220 240 - -
Chy11g01812 1621 ProSiteProfiles GYF domain profile. 560 610 IPR003169 GO:0005515
Chy11g01812 1621 MobiDBLite consensus disorder prediction 1563 1596 - -
Chy11g01812 1621 MobiDBLite consensus disorder prediction 1478 1498 - -
Chy11g01812 1621 PANTHER GYF DOMAIN-CONTAINING PROTEIN 6 1621 - -
Chy11g01812 1621 MobiDBLite consensus disorder prediction 46 259 - -
Chy11g01812 1621 CDD GYF 560 617 IPR003169 GO:0005515
Chy11g01812 1621 PANTHER GYF DOMAIN-CONTAINING PROTEIN 6 1621 - -
Chy11g01812 1621 MobiDBLite consensus disorder prediction 55 69 - -
Chy11g01812 1621 MobiDBLite consensus disorder prediction 1480 1498 - -
Chy11g01812 1621 Pfam GYF domain 564 601 IPR003169 GO:0005515
Chy11g01812 1621 Gene3D - 547 630 IPR035445 -
Chy11g01812 1621 Coils Coil 904 926 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01812 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein - csv:101204211 2988.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01470 Chy-Chr3:17205799 Chy11g01812 Chy-Chr11:24457203 3.42E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1305 . . . Bda11g00384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01812 Cme11g02345 . . . Bda11g00384 . . . Bma06g01339 Sed09g0359 . . . . . . Cpe17g00925 . Bhi12g02417 Tan06g1477 Cmetu11g1068 . . . . . . . . . . . Lsi09g01748 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003820 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01812 Chy_Chr11 FPKM 0.871237 2.374598 3.401197 2.980912 1.810523 2.288421 2.327827 3.423477 3.246008 2.597917