Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01815 ATGATGCATTATCAAGCAGAGCGTTCATGGGAGTACTACATGCCGGTGACGGCATCAGCGTCAAGAGACCCCGTGGACCGAGTAATCCGGCTAGCGGCGGAGAGTGCGGTGGTGATATTCAGTGTGAGCAGCTGCTGCATGTGCCACGCTCTCAAGAGGTTGCTTTGTGGAATGGGAGTAAGCCCGACGGTGTACGAGCTGGACCATGACCCCAGAGGCAAAGACATTGAAAGAGCTTTGATGAGGCTGGTTGGAGCCACCTCGCCCCCAGTCCCCGTCGTCTTCATCGGCGGGAAGCTCGTAGGGTCCATGGATAGAGTTATGGCTTCTCATATTAATGGAACTTTGATAGATTGA 357 54.06 MMHYQAERSWEYYMPVTASASRDPVDRVIRLAAESAVVIFSVSSCCMCHALKRLLCGMGVSPTVYELDHDPRGKDIERALMRLVGATSPPVPVVFIGGKLVGSMDRVMASHINGTLID* 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24507400 24507928 - Chy11G203950.1 Chy11g01815 237576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01815 118 SUPERFAMILY Thioredoxin-like 25 117 IPR036249 -
Chy11g01815 118 Pfam Glutaredoxin 37 101 IPR002109 -
Chy11g01815 118 ProSiteProfiles Glutaredoxin domain profile. 25 118 - -
Chy11g01815 118 PANTHER GLUTAREDOXIN 5 117 IPR011905 -
Chy11g01815 118 PANTHER GLUTAREDOXIN-C5 5 117 - -
Chy11g01815 118 TIGRFAM GlrX-like_plant: glutaredoxin-like family 29 117 IPR011905 -
Chy11g01815 118 CDD GRX_GRXh_1_2_like 36 117 - -
Chy11g01815 118 Gene3D Glutaredoxin 23 118 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01815 K03676 grxC, GLRX, GLRX2; glutaredoxin 3 - csv:101219638 238.424
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01553 Chy-Chr6:17411439 Chy11g01815 Chy-Chr11:24507400 1.75E-52 dispersed
Chy11g01480 Chy-Chr11:21538897 Chy11g01815 Chy-Chr11:24507400 2.90E-33 dispersed
Chy11g01815 Chy-Chr11:24507400 Chy06g00668 Chy-Chr6:4581657 4.79E-30 dispersed
Chy11g01815 Chy-Chr11:24507400 Chy06g00667 Chy-Chr6:4570591 6.97E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1312 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00173 Cam06g0039 Cec06g0193 Cco06g0186 Clacu06g0188 Cmu06g0183 Cre06g0955 . . . . . . Chy11g01815 Cme11g02349 . . . . . . . . Sed09g0793 . . . . . . Cpe17g00928 . Bhi12g02414 Tan06g1469 Cmetu11g2431 . Hepe03g1151 . . . . . . . . . Lsi09g01751 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000804 3 3 3 4 3 3 0 3 3 3 3 3 5 3 3 4 3 4 5 3 3 3 3 2 3 2 3 5 3 1 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01815 Chy_Chr11 FPKM 0.410697 0.0 0.264175 0.0 0.0 0.0 0.0 0.0 0.0 0.121086