Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01822 ATGAAAAAGTTCTTTAACTTGATTGATCTTACAGGGGATGCTCTTGCTGCATGGAAAGCTCAGTTGGTGGATCCAAACAGTGTTCTTCAAAGTTGGGACCCCACTCTTGTAAACCCATGCACTTGGTTCCACATCACGTGCGACAGTAATAACTTTGTCGTTAGAGTGGATCTTGGCAACGCTAATCTCTCCGGACCGCTTGTTCCTGAACTTGCGAACTTAAAAAATCTTCAATATTTAATGGTATATGACAATAATTTGAGTGGTTCAATTCCAAGGGAGTTGGGGAAATTAACAAATTTGAAAAGTTTGTTTCTATACAACAACTACTTCTCTGGGCCGTTACCATCTTCATTGGGAAATTTGAGCTCTTTGTTATTCTTTGAAGCACAAGGCAACAGTTTTTGTGGGATGATTCCAGCATCCTTTGGGGCTTTGACATCTTTGAAGAGATTGAGATTAGACAATAATAATCTTAGTGGTGACATCCCTTTAACTGTTCTACAACTGGTTGAGTTTGCCAATCTTCAACTTCTGAACGTTTCACTAAACTCGTTTTCTGGGACAACTCGCCCGACTAATTCATCAGGGGATGCTCTTTATGCCTTGAGGAGATCAGTGAAGGATCCAAACAATGTCTTACAAAGTTGGGATCCAACTCTTGTTGATCCTTGTACTTGGTTCCATGTCACTTGTGACTCTGCTAACCATGTCACTCGACTTGATCTTGGAAATGCGAAGCTATCAGGTAACTTAGTTCCTGAGTTGGGGAATCTCGAACACCTTCAATATTTGGAATTGTACATGAATGAATTAGTGGGTCCAATTCCAAAGGAGATCGGACGGTTGAAAAGCCTCATCAGTTTAGATCTCTACCACAACAACCTCACTGGCTCTATTCCTTCTTCTCTCAAAAACCTCCACAATCTCAACTTCCTGAGATTGAATGGGAACAGGCTCAGTGGAAGAATACCAAGGCAACTCACCAAACTTGGCAACCTAAAAATCATTGATGTATCGGATAACGATCTGTGTGGGACGATTCCGACATCAGGCTCCTTCTCCAAATTCTCAGAAGAAAGTTTCAAGAACAACCCAAGATTGGAAGGGCCAGAACTAATGGGATTTGTGAGATATGAAAATGGAGGAACCTGCTGA 1158 41.45 MKKFFNLIDLTGDALAAWKAQLVDPNSVLQSWDPTLVNPCTWFHITCDSNNFVVRVDLGNANLSGPLVPELANLKNLQYLMVYDNNLSGSIPRELGKLTNLKSLFLYNNYFSGPLPSSLGNLSSLLFFEAQGNSFCGMIPASFGALTSLKRLRLDNNNLSGDIPLTVLQLVEFANLQLLNVSLNSFSGTTRPTNSSGDALYALRRSVKDPNNVLQSWDPTLVDPCTWFHVTCDSANHVTRLDLGNAKLSGNLVPELGNLEHLQYLELYMNELVGPIPKEIGRLKSLISLDLYHNNLTGSIPSSLKNLHNLNFLRLNGNRLSGRIPRQLTKLGNLKIIDVSDNDLCGTIPTSGSFSKFSEESFKNNPRLEGPELMGFVRYENGGTC* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24586601 24594674 - Chy11G204020.1 Chy11g01822 237583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01822 385 Pfam Leucine rich repeat N-terminal domain 12 48 IPR013210 -
Chy11g01822 385 Pfam Leucine rich repeat N-terminal domain 194 233 IPR013210 -
Chy11g01822 385 Gene3D Ribonuclease Inhibitor 192 375 IPR032675 -
Chy11g01822 385 Gene3D Ribonuclease Inhibitor 11 172 IPR032675 -
Chy11g01822 385 PANTHER LRR AMINO-TERMINAL DOMAIN PROTEIN 187 385 - -
Chy11g01822 385 PANTHER LRR AMINO-TERMINAL DOMAIN PROTEIN 9 165 - -
Chy11g01822 385 Pfam Leucine Rich Repeat 285 307 IPR001611 GO:0005515
Chy11g01822 385 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 187 385 - -
Chy11g01822 385 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 9 165 - -
Chy11g01822 385 SUPERFAMILY RNI-like 56 350 - -
Chy11g01822 385 SMART LRR_typ_2 307 331 IPR003591 -
Chy11g01822 385 SMART LRR_typ_2 74 98 IPR003591 -
Chy11g01822 385 SMART LRR_typ_2 283 306 IPR003591 -
Chy11g01822 385 SMART LRR_typ_2 146 170 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01822 - - - csv:101221447 363.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01379 Chy-Chr2:10377317 Chy11g01822 Chy-Chr11:24586601 5.22E-47 dispersed
Chy09g00487 Chy-Chr9:4674297 Chy11g01822 Chy-Chr11:24586601 1.72E-24 dispersed
Chy11g01822 Chy-Chr11:24586601 Chy07g00853 Chy-Chr7:11131536 4.76E-54 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1325 . . Bda01g02111 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01822 Cme11g02357 . . . . . . . . Sed08g1027 . . . . . . Cpe17g00935 . Bhi12g02400 Tan06g1455 Cmetu11g0835 . Hepe03g1159 . . . . . . . . . Lsi09g01758 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000502 6 3 2 2 3 3 3 3 3 2 2 3 4 3 4 6 3 4 4 3 4 3 2 3 5 4 3 5 8 6 109
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01822 Chy_Chr11 FPKM 14.314391 17.42108 17.727081 18.14868 13.511449 16.615406 11.866695 16.138317 15.609177 14.470024