Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01830 ATGGCCTTCTTCACATTCAACATTCACACTCTTCTCTACCTCTTCCTACTTTCCTTTCCCCTCTTTTCAGCTGCCACCTCCGGAGTTCAAACTCATTTCCCTCCATTTTCCAGAGCCTCCCGTTTCAACAATGGCTTTCAAAGGATTCTTCTCAGCGTCGCCTTAGGTATCCTCACCGGACTCACCGCCTCTTTTCTCTCTGTTTTCTTCATTCGCGCCCTTCTCCGTTTCCTAAACAGAACCCCACTTCTCCAAGGACCCCTAATCTTTTCCCCCAAAATCGACGCCGATTCTCTTCAATCAGCTCTTTTGAACCAAACCCATTTATTGGGTTCGAGTTCCAACCCAAATGGGAAATGCTACAAGGCGATTCTCGCAAACGGGTTCACCGTGGCGGTGAAGAAGCTCGAACCCATTCAATGTGGAAGGACGGAGGCACGGCGGCGGATACAGCAGCAGATGGCGGTGCTGGGTGCTATGAAACATCGGAATGTGATGAGTTTAAGGGCTTACGTTGGTGAAATGGGAAGCTGTTGCTTGGTTTATGACTTTTTGCCTACTGGGTCTCTTGAGGATGCAATGAGGAAAGTGAGAGAGAATCAATTAGAACTCAAATGGGAAGTTCGGCTTCGAATTGCTGTTGGGATTGCTAGAGGGCTTCAGTTTCTCCATTTTGAATGCAACCCTCGAATTCTTCACTGCAATTTGAAGCCTTCAAACATTCTCCTAGACGCAGAGTTCGAACCAAGATTGGTTGATTTTGGGTTAACGAATCTCATCCCTGATTTTCATACATCACCTTCTTTGTACACTGCTCCCGAGTGTCTTAACAACTCCAGGTATACTGACAAGAGTGACATTTACAGCTTTGGGGTTATATTAAGAGCTCTGTTAACCGGTAGAGATCCGATAGAGACCGAACAGGTGTCGTCAGATAGAGGAGATAGCAGTGGCAGTGGGGGAAGTTTAGGGAGGTGGGTTGAGCAATCAGTGGAGCCACGAGAAGCTCTTGATAAAAGCATGATAGGAGAAGGAATGGAAGAAGAAGAAGAAGAGATGGTGTTGGCATTGAGAATTGCTGATAAAGTTGATGGAAAGAAAGAAGAAAATGGGAGGGGCCAAACCGCAAGGGGAAGTCACGAGATATCTTGCCAACTTTATCTGTTTAACCTTATAAATCTGAATTCTACTCTAAAGATACATCCAAGCACCAACTTCGCGGCAGACCGAACCGAACCATTGTTCATCATGCAGTTCCAGGCAGCTCTTTCCATAGCATCTCCATCATGCTCCCTCCTCCCACCAACAGCCAAATCAATGGCCTTCTCAATCCCAACTAGGTCCATGCCAAGGCAAAGCAAAGGCACCCTAAAAGCAAAGGCAAGTGCAGTAGGACAAGACCCTTCAACTGTTGACTACAGCTCCATGTCCTCTGTTTTTCCAGCAGAGGCTTGTGACACTGTTGGAGGTGAAGCTTGTGATGTGGAAATGTATCCTGAAGTAAAGCTAAAACGAGAGGCCAAAAAAGGGAGTAGTGTTACAGAGCCAGTTGAGAGAGAGTATCTACAATATGACAGTCCCAAGACAGTCTTTCCAGCGGAGGCTTGTGATGATTTGGGTGGTGAATTCTGTGATCCAGAGTATCAAAAAGGAGTTTACTAG 1662 46.33 MAFFTFNIHTLLYLFLLSFPLFSAATSGVQTHFPPFSRASRFNNGFQRILLSVALGILTGLTASFLSVFFIRALLRFLNRTPLLQGPLIFSPKIDADSLQSALLNQTHLLGSSSNPNGKCYKAILANGFTVAVKKLEPIQCGRTEARRRIQQQMAVLGAMKHRNVMSLRAYVGEMGSCCLVYDFLPTGSLEDAMRKVRENQLELKWEVRLRIAVGIARGLQFLHFECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPDFHTSPSLYTAPECLNNSRYTDKSDIYSFGVILRALLTGRDPIETEQVSSDRGDSSGSGGSLGRWVEQSVEPREALDKSMIGEGMEEEEEEMVLALRIADKVDGKKEENGRGQTARGSHEISCQLYLFNLINLNSTLKIHPSTNFAADRTEPLFIMQFQAALSIASPSCSLLPPTAKSMAFSIPTRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKREAKKGSSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY* 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24658353 24661333 - Chy11G204100.1 Chy11g01830 237591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01830 553 Pfam Light regulated protein Lir1 420 545 IPR009856 GO:0009507
Chy11g01830 553 MobiDBLite consensus disorder prediction 305 332 - -
Chy11g01830 553 PANTHER LEUCINE RICH REPEAT KINASE 2 10 360 - -
Chy11g01830 553 ProSiteProfiles Protein kinase domain profile. 104 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy11g01830 553 MobiDBLite consensus disorder prediction 310 324 - -
Chy11g01830 553 SUPERFAMILY Protein kinase-like (PK-like) 117 307 IPR011009 -
Chy11g01830 553 Gene3D Transferase(Phosphotransferase) domain 1 185 364 - -
Chy11g01830 553 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE CORYNE 10 360 - -
Chy11g01830 553 Pfam Protein kinase domain 117 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy11g01830 553 Gene3D Phosphorylase Kinase; domain 1 90 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01830 - - - csv:101222394 652.899
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy07g01542 Chy11g01830 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01459 Chy-Chr6:15803650 Chy11g01830 Chy-Chr11:24658353 2.96E-17 dispersed
Chy07g01542 Chy-Chr7:19666562 Chy11g01830 Chy-Chr11:24658353 1.16E-104 dispersed
Chy11g01830 Chy-Chr11:24658353 Chy10g01166 Chy-Chr10:16515367 1.82E-42 dispersed
Chy11g01830 Chy-Chr11:24658353 Chy02g02519 Chy-Chr2:28567627 2.49E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1341 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00159 . . . . . . Cone14ag0652 Cone15ag0664 . . . Csa04g00228 Chy11g01830 Cme11g02366 . . . . . . . Bma06g01329 . . . . . . . . Cpe03g01179 Bhi12g02390 . . . . . . . . . . . . . Lsi09g01767 . Chy07g01542 Cme07g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013860 0 1 0 0 0 1 1 1 1 1 1 1 2 1 0 1 1 0 2 1 1 0 1 1 1 1 1 1 1 0 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71590 PF00069 Pkinase 1.60E-31 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01830 Chy_Chr11 FPKM 10.395145 12.105849 11.20616 9.402603 14.228071 16.885376 13.630462 12.225171 12.724308 12.456677