Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01832 ATGGAGCAAGAAATTCAACAGGGGAGAGCTGAAGAGGTAAATGATATACGAAATATGGGGATCAAAATTAAAAGAGACAGTAAGAGAGTCAGACACAAGTATGATGGAGAACAAAATCGGAGGGAAGCACGACATATGCAAATTCAAAGTGAGAAGAAAACAACAGTTTTGGACTTGAAGGGTTTGTCTTCATCTTCCTTCTTCTTCGACGATTTACGTCATACAGATGAGGTTGGAGTTTGGAAGTCAGCTAGTGTGCCAAATCACCATGTGCGATTTTCTCCGAGCAATGCACTATATGGCCATTCTGTTGATACTGTTGCATCTCACTTTGAGGAGGAGGAAGTTTTTGAGTCACTTGAAGAATTGGAGGCTCAAACCATTGGAAACCTCCTCCCTGACGATGATGACTTACTTGCGGGAGTAACTGATGGGCTTGATTGTTTGGTTGAAACTACTGGGGAGGATGATGCTGAGGACTTAGATTTTTTTAGCAATGTCGGAGGGATGGATTTGGGTGATGATGGGTTATCTGTGGGACAGAAGAATTCTGAATCTCCTGGACTTTTTAACAATTTGCATAATGGTGCTATGGCTGGAGAGCATCCTTTAGGCGAACATCCTTCCAGGACTCTGTTTGTGAGAAACATAAATAGCAATGTTGAAGATTCTGAATTGAAGGTCCTTTTTGAGCAATATGGAGACATTCGTACTCTTTATACAGCATGCAAACACCGAGGGTTTGTTATGATATCCTACTATGATATTAGAGCTGCCCGTAATGCAATGAAAGCACTCCAGAATAAACCGTTGAGACGAAGGAAGCTTGACATACATTATTCTATACCGAAGGACAACCCTTCTGAAAAAGATATCAACCAAGGAACTCTTGTTGTTTTTAACCTTGAGTCTTCCGTATCAAATGAAGAACTTCGACAAATATTTGGTGTCTATGGAGAAATCAAAGAGATCCGTGAAGCCCCCCACAGAAGTCATCATAAATTCATTGAATTTTATGATATCCGAGCTGCAGAGGCTGCTCTTTGTGCATTAAACCTGAGTGATATAGCAGGCAAGCAGATAAAGCTTGAGCCAAGTCGTCCTGGTGGTGTGAGACGCAGTTTGGTTCAACAATTACATCCACAATTGGAGCGGGAAGATATTGGTCTCTATTTGCAACAGGGTAGCCCTCCCGTTAACTGTAGTGCCGGCTTCTCTGGCTTAGTTCCTAGTGGGACTATCAAGTCTAGCAGCCTGAGTAATGGATCTGTTCTTGGAGTACACTCTATGTTACGAGCTCCATCTTTGGATACTGTGTTGCATCATGGGATATCTTCTAGCGTTCCTAGTAGCTTACCTTCTGTAATGAGATCTGAATCAACTGGCAACCAATCTGGCTTCATTGACTCTGGTCATTCACCTTCACAACTGAAGCTAGGCATCCGGGCATCTTCAGCTGTTCATCCTCATTCACTTCCAGAACACCCTGATGGTTTGAACAACAACGTTCACTGCAATTCTCTAAATACGATTGGAGGAAACATCAATCTACGACCGCCTGAAAGAGCTGATAGCAGGCAGCTATGTGGAGTGAACTTTAATGGTCGGTCAATTGAATTGAATGAAGATGTTTTTGCATCTGGTGGTAACAGAACATGCCCCATTCCTGGACCTCATTATGGATGGGGTAACTCCTACCGGCCCCAGCCTCCAGCTCCAGGTGTTGTATGGCCGAATTCTCCATCTTATATGAATGGAATTGCTGCTGCCCATACCCCAACCCAGATCCATGGAGTTCCAAGAGCAGCATCCCATTTGATGCACACAGTTATGCCCATGAATAATCACCACGTTGGATCAGCACCAGCTGTTAATCCTTCTATTTGGGATAGACAACATTATGCTGGGGAATTGTCTAAGGCCTCTGGTTTCCATTCAGGTTCCATAGGGAATATGAATCTGTCTAACAATTCACCACAGTCTATGGATTTTTTCTCTCATATCTTCCCTCAAGTTGGTGGAAATTCTGTAGAGCTTCCTATCCCCCAACGGAATGTAGGACTACAATCTCATCATCAGCGGTGCATGGTTTTTCCTGGACGGGGCCAAATTCTTCCAATGATGAATTCATTCGACTCTTCAAATGAACGTGGTAGAAGCCGAAGAAATGAAGCAGCCTCTAATCAAGCAGATAAGAAGCAATATGAACTTGATATCGATCGCATAATGAGGGGTGAAGACAATCGTACTACACTTATGATAAAGAACATTCCTAACAAGTATACTTCAAAGATGCTTTTGGCTGCAATTGATGAACGCCATCGAGGAACATATGACTTCATCTATCTGCCCATTGACTTTAAGAACAAATGTAACGTGGGATATGCGTTCATTAACATGACTGATCCTGGCCTAATCATTCCATTCTATGAGGCATTTAATGGAAAAAAATGGGAGAAATTCAATAGTGAGAAGGTGGCATCACTTGCATATGCTCGCATACAGGGAAAAGCTGCTCTCATCGCTCATTTCCAGAATTCAAGCTTAATGAATGAAGATAAGCGATGTCGACCAATCCTTTTCAACACAGATGGCCCCAATGCAGGTGATCAGGTTCCGTTTCCGATGGGGGTAAATGTACGCACTAGGCCTGGAAAAACTCGAACTAATACGCCGGACGAAAATGCTGATGAAGGTCTACTAATTTCCGGAAATGGTGAGAATTATCCAAGTGGAGACACATCTTCTTCATGTCTTGTAAAGGATCTGGACCAGCCCGTACCATAA 2787 42.91 MEQEIQQGRAEEVNDIRNMGIKIKRDSKRVRHKYDGEQNRREARHMQIQSEKKTTVLDLKGLSSSSFFFDDLRHTDEVGVWKSASVPNHHVRFSPSNALYGHSVDTVASHFEEEEVFESLEELEAQTIGNLLPDDDDLLAGVTDGLDCLVETTGEDDAEDLDFFSNVGGMDLGDDGLSVGQKNSESPGLFNNLHNGAMAGEHPLGEHPSRTLFVRNINSNVEDSELKVLFEQYGDIRTLYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDINQGTLVVFNLESSVSNEELRQIFGVYGEIKEIREAPHRSHHKFIEFYDIRAAEAALCALNLSDIAGKQIKLEPSRPGGVRRSLVQQLHPQLEREDIGLYLQQGSPPVNCSAGFSGLVPSGTIKSSSLSNGSVLGVHSMLRAPSLDTVLHHGISSSVPSSLPSVMRSESTGNQSGFIDSGHSPSQLKLGIRASSAVHPHSLPEHPDGLNNNVHCNSLNTIGGNINLRPPERADSRQLCGVNFNGRSIELNEDVFASGGNRTCPIPGPHYGWGNSYRPQPPAPGVVWPNSPSYMNGIAAAHTPTQIHGVPRAASHLMHTVMPMNNHHVGSAPAVNPSIWDRQHYAGELSKASGFHSGSIGNMNLSNNSPQSMDFFSHIFPQVGGNSVELPIPQRNVGLQSHHQRCMVFPGRGQILPMMNSFDSSNERGRSRRNEAASNQADKKQYELDIDRIMRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHRGTYDFIYLPIDFKNKCNVGYAFINMTDPGLIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPMGVNVRTRPGKTRTNTPDENADEGLLISGNGENYPSGDTSSSCLVKDLDQPVP* 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24676839 24685756 + Chy11G204120.1 Chy11g01832 237593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01832 928 MobiDBLite consensus disorder prediction 871 928 - -
Chy11g01832 928 SMART rrm1_1 211 279 IPR000504 GO:0003723
Chy11g01832 928 SMART rrm1_1 296 364 IPR000504 GO:0003723
Chy11g01832 928 SMART rrm1_1 751 827 IPR000504 GO:0003723
Chy11g01832 928 MobiDBLite consensus disorder prediction 709 731 - -
Chy11g01832 928 PANTHER RNA RECOGNITION MOTIF-CONTAINING 35 910 - -
Chy11g01832 928 MobiDBLite consensus disorder prediction 715 731 - -
Chy11g01832 928 Pfam RNA recognition motif 2 749 845 IPR007201 -
Chy11g01832 928 PANTHER PROTEIN MEI2-LIKE 4 35 910 - -
Chy11g01832 928 MobiDBLite consensus disorder prediction 448 473 - -
Chy11g01832 928 Gene3D - 294 384 IPR012677 -
Chy11g01832 928 CDD RRM2_MEI2_like 294 364 - -
Chy11g01832 928 MobiDBLite consensus disorder prediction 907 921 - -
Chy11g01832 928 CDD RRM3_MEI2_like 752 837 IPR034454 -
Chy11g01832 928 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 362 IPR000504 GO:0003723
Chy11g01832 928 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 276 IPR000504 GO:0003723
Chy11g01832 928 SUPERFAMILY RNA-binding domain, RBD 207 370 IPR035979 GO:0003676
Chy11g01832 928 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 368 IPR000504 GO:0003723
Chy11g01832 928 SUPERFAMILY RNA-binding domain, RBD 751 836 IPR035979 GO:0003676
Chy11g01832 928 CDD RRM1_MEI2_like 209 285 IPR034453 -
Chy11g01832 928 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 283 IPR000504 GO:0003723
Chy11g01832 928 Gene3D - 200 293 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01832 - - - csv:101222875 1672.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01697 Chy-Chr3:18600638 Chy11g01832 Chy-Chr11:24676839 1.40E-29 dispersed
Chy05g00247 Chy-Chr5:2081644 Chy11g01832 Chy-Chr11:24676839 0 dispersed
Chy11g01832 Chy-Chr11:24676839 Chy12g01058 Chy-Chr12:15728438 1.26E-11 dispersed
Chy11g01832 Chy-Chr11:24676839 Chy10g00826 Chy-Chr10:14210804 1.26E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1348 Blo01g00156 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00157 Cam06g0059 Cec06g0173 Cco06g0168 Clacu06g0167 Cmu06g0163 Cre06g0939 Cone14ag0649 Cone15ag0659 . . . . Chy11g01832 Cme11g02368 . . . . . . . . Sed09g0339 . . . . . . Cpe17g00944 . Bhi12g02387 Tan06g1439 Cmetu11g1451 . Hepe03g1175 . . . . . . . . . Lsi09g01769 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003734 3 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01832 Chy_Chr11 FPKM 0.0 0.0 3.611248 4.012197 10.529374 11.594043 10.148651 0.0 0.0 0.0