Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01838 ATGGTGATTGAACTGTTACGTGAATTCCAAATGCAGGACGTGAAATGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGGGGACGAGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAA 192 45.83 MVIELLREFQMQDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD* 64
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24716856 24717154 + Chy11G204180.1 Chy11g01838 237599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01838 63 Gene3D - 4 62 IPR023407 -
Chy11g01838 63 PANTHER 40S RIBOSOMAL PROTEIN S27 12 63 IPR000592 GO:0003735|GO:0005840|GO:0006412
Chy11g01838 63 PANTHER 40S RIBOSOMAL PROTEIN S27-1-RELATED 12 63 - -
Chy11g01838 63 Pfam Ribosomal protein S27 13 61 IPR000592 GO:0003735|GO:0005840|GO:0006412
Chy11g01838 63 ProSitePatterns Ribosomal protein S27e signature. 15 47 IPR000592 GO:0003735|GO:0005840|GO:0006412
Chy11g01838 63 SUPERFAMILY Zn-binding ribosomal proteins 12 61 IPR011332 GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01838 K02978 RP-S27e, RPS27; small subunit ribosomal protein S27e - csv:101206136 114.005
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1370 . Blo16g00694 . . . . . . . . . . . . . . . . . . . . . . Cla06g00153 . Cec06g0169 Cco06g0163 Clacu06g0163 . Cre06g0935 . . . . . . Chy11g01838 Cme11g02374 . . . . . . . . Sed09g0344 . . . . . . Cpe17g00947 . Bhi12g02381 Tan06g1432 Cmetu11g0098 . . . . . . . . . . . Lsi09g01773 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001582 4 2 3 4 3 1 4 2 2 1 2 1 2 2 2 3 1 4 3 2 2 3 1 0 2 1 2 4 2 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01838 Chy_Chr11 FPKM 550.027344 608.952393 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0