Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01840 ATGGCGGTGGTGGAAGAGAAGAATGACGTGGTAATTCAGTTACCAATGGAGAAGAATGACGTGGTAATTAAAGTCGAAGACAATCTGAAGAAACTGCTGATGGAAGTACTGGTGGACGAGTTCCAATCATCAGAAAACACCATTAAACCTGTTATTTACAAAGTACCAAAGTTCCTTAAAGATATCCAACCGAAAGAGTACGAGCCACACATGGTTTCGTTTGGGCCGTACCATCATGGGTGTGAACATTTGATTCGAATGGAACAGGAAAAACAGAAAGTATTTCAGCATCTCGTAGAACACAATGTAGTCAATTACAGGTCGATTGTGAGTGATGTGTGTGACATTTTGGAAGATCTATATGGAGCATATGATGATCTTGATGAGAATTGGTGGAAGAATGCTGAGAAGTTCATGGAGGTGATGATCATAGATGGGTGTTTCTTGCTGGTTTACTTCTTGGCAGATGAAGGTTACAGGTCGCTAATTACTTTAAAATCAAATATAAAGCGAGACATTTTGCTGCTTGAGAATCAGCTGCCTTTCCAGCTTCTTGAACTGTTGTATGACATATTACCAATTAGAAAGGATCAAAATACAACTTTGACTTCACTAATTATAAACAACTTATCATTTGTCACACAAGATTATCGAGGAATAACAGGACAGAAGCACATTTTAGAGTTGTATAGAAGGTTATTATTGTTTCCAGAGAAGGATGAAAGTTATGAGAGAGAAGAAAATGACCCAACACCCGTAGAGTGGCGTTCAATAATTCCACAAGCAACAGAGCTTAGTAAGATGGGGATAACATTCAAGAGAAGCTACACAAATGGCCTTCTCCATGTGTCTTTTGACGAAAAACAAGAGGTGTTGGAATTGCCACATTTGGAGGTGTCCAATTACTTTGGTACACATTTATCAAATGTGATGGCATTTGAGAAAATGTGTATTGATGTTAAATGTGCGGTCACGTCTTATGTCATGTTGATGAAAAATCTAATTGTAGATGACAAAGATGTGATACTGCTGATCTCCAGTGGAATATTATCTAAAAATGAAATTGGTATCGGTGGTGGGGTAGAGTTGTTCGATTGGCTGGCCAAAGCTACAATTGACAATCAGTTGGTTACCCGCGATATTACTGACGTCTGCAAGATGTTGGAGGATTATTATTATTTTTACAAACCTTGGACTAAGTGGTGGGTAAATCTCAAAGACCCACGAACTCAAAAGCCATGGGTGGTTATCTCCATTGCTGCTGCTTCTTTTGGTTTTCTCCTCCAAATTACCCAAACCACACTCCAAGTATATGAACACTTCCGCTCAAATCATTGA 1338 38.86 MAVVEEKNDVVIQLPMEKNDVVIKVEDNLKKLLMEVLVDEFQSSENTIKPVIYKVPKFLKDIQPKEYEPHMVSFGPYHHGCEHLIRMEQEKQKVFQHLVEHNVVNYRSIVSDVCDILEDLYGAYDDLDENWWKNAEKFMEVMIIDGCFLLVYFLADEGYRSLITLKSNIKRDILLLENQLPFQLLELLYDILPIRKDQNTTLTSLIINNLSFVTQDYRGITGQKHILELYRRLLLFPEKDESYEREENDPTPVEWRSIIPQATELSKMGITFKRSYTNGLLHVSFDEKQEVLELPHLEVSNYFGTHLSNVMAFEKMCIDVKCAVTSYVMLMKNLIVDDKDVILLISSGILSKNEIGIGGGVELFDWLAKATIDNQLVTRDITDVCKMLEDYYYFYKPWTKWWVNLKDPRTQKPWVVISIAAASFGFLLQITQTTLQVYEHFRSNH* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24721439 24723274 + Chy11G204200.1 Chy11g01840 237601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01840 445 Pfam Plant protein of unknown function 52 427 IPR004158 -
Chy11g01840 445 PANTHER PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED 44 439 IPR004158 -
Chy11g01840 445 PANTHER PROTEIN, PUTATIVE (DUF247)-RELATED 44 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01840 - - - cmo:103498898 405.216
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01840 Chy-Chr11:24721439 Chy11g01849 Chy-Chr11:24757508 1.25E-50 dispersed
Chy11g01840 Chy-Chr11:24721439 Chy11g01841 Chy-Chr11:24731790 1.25E-90 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1387 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00150 Cam06g0064 Cec06g0166 Cco06g0160 Clacu06g0161 Cmu06g0158 Cre06g0932 . . . . . . Chy11g01840 Cme11g02376 . . . . . . . . Sed09g0351 . . . . . . Cpe17g00949 . Bhi12g02379 Tan06g1430 Cmetu11g0377 . Hepe03g1179 . . . . . . . . . Lsi09g01778 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001248 0 1 0 0 0 1 6 2 2 4 1 2 2 2 4 8 1 0 5 1 3 1 1 5 2 4 2 10 3 0 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01840 Chy_Chr11 FPKM 8.784178 12.822264 16.26412 18.848639 16.649139 17.604717 18.463535 18.327499 20.951502 21.802761