Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01847 ATGAGACGTTCCCTAGTTGTTGGGCTCTGTTTATGGTTCTCTCTGACATTGGTGATTGCAGATGCAAATGACTCTTCTTTGGAAGGTTTAAGCTGGTCTTCTGCTAAAGAAGAGGGCGATCTCCTTATCGACCATAGGCCCCAAGAAGATTCCGCCGCCGCCGCCGCACTTGTCGTTCACGACGCCGATGGCTTTGATGGCGGATTTTCTTCCCTCGATAGCATGTTACAGTGGGCTATAGGCCATTCTGATTCTGCAAAACTAAAGGATACTGCACAGGATGTGAAACGATTGTCTCCAAATGAGATAAAGAAGCGTCAAGAAGAAATTAAGGACCTGATAGAGGAGTTGAAGCTGCCATCAGATGCAAAGCTGATGCAAATTGCGGTGGATGACTTGAAAAATTCCTCTCTATCATTGGAAGATCGCCATCGGGCATTACAGGAGCTTTTGGTACTTGTTGAGCCAATAGACAATGCAAATGATTTGGACAAACTTGGCGGCCTTGCTGTACTTACTCGTGAGCTTAATCATGTTGATCCTGATGTTAGGAAAATTGCGGCATGGATTCTTGGAAAAGCAAGTCAGAATAATCCTATCGTTCAAAAGCAGGTATTGGAACTTGGGGCACTAGCAAAATTAGTGTCGATGGTAAAATCTGATTTTGTAGAAGAAGCCATCAAGGCATTGTATGCTATTTCTTCGTTGGTTCAAAATAATTTATCTGGTCAGGAATTATTCTATGCCGAAGCTGGAGAAACTATGCTTCAGGATATTTTAAGCAACTCGAGCATGGATGTCAGATTGCAGAAGAAAGCTGTTTTTCTTGCAAGTGATTTGGCTGTGACACAACTAGAAAAACCAGATGAAGCTGAAAGGCCATTTTTTGGAGATCGCCTTTTCTTGAAGTCTGTGGTAAATCTCATCCATTCAACAGACATCGATCTCCAGGAGAAGGCCCTCATTGCTCTAAAGAACCTCCTGCTTCTGAGGACAACCAAAGCTCAAGTTTTAAAAGAATTATGTGGGTTGGATGCTGCTTTGGAGAGGATGAGGATGAAGCTGAAGGTATTAATGGAAGAGGAAGATCACCGGGATTATGCAATGGATGTGGAAGATCTACGAAGCCAAGTGGAGCTAATTTTCCTTGAAAAGCTGGGAAAGAGAAATAAGAAATCACTCAAAATCGAGGATGAAATGGACTAG 1206 42.87 MRRSLVVGLCLWFSLTLVIADANDSSLEGLSWSSAKEEGDLLIDHRPQEDSAAAAALVVHDADGFDGGFSSLDSMLQWAIGHSDSAKLKDTAQDVKRLSPNEIKKRQEEIKDLIEELKLPSDAKLMQIAVDDLKNSSLSLEDRHRALQELLVLVEPIDNANDLDKLGGLAVLTRELNHVDPDVRKIAAWILGKASQNNPIVQKQVLELGALAKLVSMVKSDFVEEAIKALYAISSLVQNNLSGQELFYAEAGETMLQDILSNSSMDVRLQKKAVFLASDLAVTQLEKPDEAERPFFGDRLFLKSVVNLIHSTDIDLQEKALIALKNLLLLRTTKAQVLKELCGLDAALERMRMKLKVLMEEEDHRDYAMDVEDLRSQVELIFLEKLGKRNKKSLKIEDEMD* 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24751289 24755664 - Chy11G204270.1 Chy11g01847 237608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01847 401 Gene3D - 104 383 IPR011989 -
Chy11g01847 401 PANTHER PROTEIN FOLDING REGULATOR 20 390 - -
Chy11g01847 401 SUPERFAMILY ARM repeat 111 342 IPR016024 -
Chy11g01847 401 Coils Coil 130 150 - -
Chy11g01847 401 Pfam Nucleotide exchange factor Fes1 72 163 IPR013918 -
Chy11g01847 401 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 20 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01847 K09562 HSPBP1, FES1; hsp70-interacting protein - csv:105434386 703.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00739 Chy-Chr8:15138333 Chy11g01847 Chy-Chr11:24751289 1.50E-17 dispersed
Chy11g01847 Chy-Chr11:24751289 Chy11g01849 Chy-Chr11:24757508 1.80E-08 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1395 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00149 Cam06g0065 Cec06g0165 Cco06g0159 Clacu06g0160 Cmu06g0157 Cre06g0931 . . . . . . Chy11g01847 . . . . . . . . . Sed09g0354 . . . . . . . . Bhi12g02377 Tan06g1429 Cmetu11g2072 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014136 1 1 0 1 1 1 1 0 0 1 0 0 0 1 1 1 0 1 0 1 1 1 1 1 1 0 1 3 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01847 Chy_Chr11 FPKM 13.434814 14.812277 12.22649 12.147508 15.030041 15.002172 15.319113 13.962976 12.21677 12.337601