Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01862 ATGGCCGGGTTGGTCACTGGTTCCCAACACTATCCGCACGTTGTTGATGAGAGTCACCGTGGACCTCCACTCTCGTCGAAAATCTGTCGAGTTTGCGGTGATGAAATAGGACTGACAGAAGATGGAAAAGTATTTTTGGCATGTCTTGCGTGTAATTTTCCTGTTTGTCGTCCTTGTTATGAATATGAAAGGAGCGAAGGTAACAAGTGTTGTCCCCAATGTAACACTCGCTACAAGCGTCACAAAGGTTCACCCAGAGTGATCGGCGACGATGAAGATGCTGACGATGCTGATGATTTTGAAGATGAATTCCCCATTAAACACAACAAAAACGACGAATTTCAAGCAAAACAGCCTAATCATTCGGAAAACGATGGGTACAATGATCAGAATTGGCATAAAAATGTGCAGAGCTCGTTCTCAGTTGCAGGAAGTGTGAATGGAAAGGATATGGAAGGGGAGAAGGAAGGTGGCTATGGAAGCGTAGAATGGAAAGAGAGAATTGATAAATGGAAAGTAAGACAAGAGAAGAGAGGTTTGGGGAATAAAGACGATGGAAGTAACAATGATCAAGAAGAAGATGACTACTTGTTGGCGGAGGCCCGGCAGCCATTATGGCGGAAACTACCGATATCGTCAAGCAAAATCAGTCCATATCGGATCGTCATTGTTCTCCGTCTCGTAATTCTTGCATTCTTCTTCCGATTTCGGATCCTTACTCCGGCCTACGACGCATTCCCCTTATGGCTGATCTCCGTCATATGCGAAATCTGGTTCGGCTTCTCTTGGATTCTCGATCAGTTCCCCAAATGGGCACCAATCAACAGAGAAACTTACCTCGACCGTCTCTCCATGCGGTTCGAGCGCGAAGGCGAGCCCAATCTTCTCTCACCGATCGATTTCTTCGTCAGTACAGTGGATCCTCTGAAAGAACCGCCGATCATTACCGCCAACACCGTCCTCTCGATTCTCGCGGTTGATTATCCGGTGGAGAAGGTCAGCTGCTACGTTTCGGATGATGGAGCGTCGATGTTGTTGTTTGATACACTGGCGGAGACGGCGGAGTTTGCTCGGAGGTGGGTGCCGTTTTGTAAGAAGTTTAGTATTGAACCTAGGGCTCCGGAGTTTTACTTCTCGAAGAAGATGGATTACTTGAAGGATAAGGTGTTGCCGAGCTTTGTGAAGGAGAGGAGGGCAATGAAGAGGGAATATGAAGAGTTCAAGGTGAGGATCAATGCGTTGGTGGCGAAGGCTCAGAAGAAACCAGAAGAGGGATGGGTTATGCAAGATGGGACTCCATGGCCTGGAAACCTCACCCGTGATCATCCTGGCATGATACAGGTGTATCTGGGGAGTGAAGGTGCACTTGATGTCGAAGGTAAAGAGTTGCCTCGTCTTGTATATGTTTCTCGTGAGAAACGCCCTGGATATCAACACCACAAGAAAGCTGGTGCTATGAATGCACTTGTTCGAGTCTCTGCAGTCCTCACAAATGCACCATTCATCTTGAATTTGGATTGTGATCACTACGTCAACAATAGCAAAGCTGTAAGGGAAGCCATGTGCTTTCTAATGGACCCTCAGCTTGGAAAGAAACTGTGCTATGTTCAGTTTCCTCAAAGATTTGATGGTATTGATCGCCACGATAGATATGCTAATCGTAATATAGTGTTCTTTGATATCAACATGCGAGGACTAGATGGAATCCAAGGCCCAGTTTATGTTGGCACAGGATGTGTCTTCAACAGGCCGGCTTTATATGGATATGAACCACCGGTCTCTGAGAAAAGGCCAAAGATGACATGTGATTGCTGGCCTTCTTGGTGCTGCTGCTGCTGCGGTGGTTCAAGGAAATCGAAGTCTAAGAGGAAAGGAGAAAGAGGTTTGCTAGGAGGCTTGTTCAAGAAGAAGAAAATGATGGGGAAGAGTTATGTAAGGAAAGCTCCGGGACCAGTTTTTGATCTTGAAGAGATTGAAGAAGGGTTTGAAGGTTACGATGAGTTGGAGAAGTCATCACTCATGTCCCAGAAGAATTTTGAGAAAAGATTCGGGCAGTCACCAGTTTTCATCGCTTCCACCCTTAAGGAAGATGGAGGTCTGCCAGAAGGGACTAACAGCACATCACTCGTTAAGGAAGCCATCCATGTGATAAGCTGTGGTTATGAAGATAAAACAGAATGGGGAAAAGAGATAGGTTGGATTTACGGGTCTGTCACTGAGGATATTTTGACTGGATTCAAGATGCATTGTAGAGGATGGAAGTCGGTGTACTGCATGCCCCATAGACCAGCTTTCAAGGGATCGGCTCCGATAAATCTTTCGGATCGTTTGCACCAAGTTCTGAGATGGGCTTTAGGTTCTGTTGAAATCTTCCTCAGCCGACACTGCCCGCTGTGGTATGCTTATGGAGGAAAGCTAAAATGGCTTGAGAGGCTTGCTTACATCAACACTATTGTTTACCCTTTTACTTCCATTCCATTACTTGCTTACTGCACAATTCCTGCTGTCTGTCTTCTCACTGGAAAATTCATTATCCCCACATTGACGAACTTGGCTAGTGTCTGGTTCATGGCCTTGTTTATTTCCATCATTGCAACGGCGGTGCTGGAACTTCGATGGAGTGAAGTGAGCATTGAAGACTTGTGGCGTAATGAGCAATTCTGGGTGATTGGTGGTGTCTCTGCACATCTTTTTGCAGTGTTCCAAGGGCTTCTCAAGGTCCTTGGTGGAGTAGACACCAACTTCACAGTTACAGCAAAAGCCGCTGAAGACACCGAGTTTGGAGAGCTCTATCTTTTCAAGTGGACGACTCTTCTTATCCCACCAACCACTCTCATAATCTTGAATATGGTTGGAGTGGTTGCTGGAATTTCAGATGCAATCAACAATGGATACGGTTCATGGGGTCCTCTATTTGGAAAGCTGTTTTTCGCTTTCTGGGTCATTGTTCATCTCTATCCTTTCCTCAAGGGTCTGATGGGAAAACAAAACAGGACTCCCACCATTGTCGTCCTTTGGTCCGTTCTTCTTGCTTCCATATTTTCACTTGTTTGGGTGCGTATCGATCCCTTCTTGCCCAAGCAAACTGGTCCTGTCCTCAAACAATGTGGAGTTGATTGCTAG 3123 46.05 MAGLVTGSQHYPHVVDESHRGPPLSSKICRVCGDEIGLTEDGKVFLACLACNFPVCRPCYEYERSEGNKCCPQCNTRYKRHKGSPRVIGDDEDADDADDFEDEFPIKHNKNDEFQAKQPNHSENDGYNDQNWHKNVQSSFSVAGSVNGKDMEGEKEGGYGSVEWKERIDKWKVRQEKRGLGNKDDGSNNDQEEDDYLLAEARQPLWRKLPISSSKISPYRIVIVLRLVILAFFFRFRILTPAYDAFPLWLISVICEIWFGFSWILDQFPKWAPINRETYLDRLSMRFEREGEPNLLSPIDFFVSTVDPLKEPPIITANTVLSILAVDYPVEKVSCYVSDDGASMLLFDTLAETAEFARRWVPFCKKFSIEPRAPEFYFSKKMDYLKDKVLPSFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRPALYGYEPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKRKGERGLLGGLFKKKKMMGKSYVRKAPGPVFDLEEIEEGFEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLVKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPHRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIIATAVLELRWSEVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAAEDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGISDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSVLLASIFSLVWVRIDPFLPKQTGPVLKQCGVDC* 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24856924 24861769 - Chy11G204420.1 Chy11g01862 237623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01862 1040 MobiDBLite consensus disorder prediction 82 130 - -
Chy11g01862 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 102 IPR013083 -
Chy11g01862 1040 Coils Coil 397 417 - -
Chy11g01862 1040 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 405 591 IPR029044 -
Chy11g01862 1040 MobiDBLite consensus disorder prediction 101 119 - -
Chy11g01862 1040 CDD mRING-HC-C4C4_CesA_plant 27 77 - -
Chy11g01862 1040 Pfam Zinc-binding RING-finger 24 95 IPR027934 -
Chy11g01862 1040 SUPERFAMILY RING/U-box 22 99 - -
Chy11g01862 1040 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 154 1040 - -
Chy11g01862 1040 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 24 116 - -
Chy11g01862 1040 SUPERFAMILY Nucleotide-diphospho-sugar transferases 313 851 IPR029044 -
Chy11g01862 1040 Pfam Cellulose synthase 299 1033 IPR005150 GO:0016020|GO:0016760|GO:0030244
Chy11g01862 1040 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 154 1040 - -
Chy11g01862 1040 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 24 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00458 Chy-Chr8:11169563 Chy11g01862 Chy-Chr11:24856924 0 dispersed
Chy11g00501 Chy-Chr11:5396726 Chy11g01862 Chy-Chr11:24856924 0 dispersed
Chy11g00502 Chy-Chr11:5412525 Chy11g01862 Chy-Chr11:24856924 0 dispersed
Chy11g01862 Chy-Chr11:24856924 Chy12g00068 Chy-Chr12:618907 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01862 K10999 - csv:101205733 2034.22