Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01878 ATGTCAAGTGGTTATTCAACTGAGAGTTCAGTTCTGATTTTTTTGGCTTCTACTACTGGTCTTGTAGTTGGATCTAATGTTTGGTTGGAGGATTCTGAGGAAGCTTGGATAGAGGGAGAGGTTCTAGAAATTCGTGGTGAAGAAATTAAGGTCCAATGCACCTCGGGGAAAACGGTTGCAGTTAAAGCAGCTAATGTCTATCCCAAAGATTCCGAAGTGCCACCCTGTGGGGTGGATGACATGACCAAGTTGGCTTACTTGCACGAACCTGGGGTGCTACACAATTTAAAATTGAGATATGATATCAATGAAATATATACTTATACAGGGAACATATTGATTGCTGTAAACCCTTTTACAAAGTTACCCCATCTCTATGATAGCTATATGATGGCACAATACAAAGGGGCCGCATTTGGTGAGCTTAGTCCACATCCATTTGCAGTTGCTGATGCCGCCTACAGACTTATGGTCAATGAGAAAAAGAGTCAATCCATATTGGTCAGTGGTGAAAGTGGGGCTGGAAAGACAGAAAGTACGAAGTTGCTTATGCGTTATCTTGCATATATGGGAGGGAGAGCTGCTTCCGAGGGGAGGTCTGTTGAGCAGCAAGTTCTGGAGTCAAATCCTGTTTTAGAAGCATTTGGGAATGCAAAAACTGTTCGGAACAACAACTCAAGTCGTTTTGGTAAGTTTGTGGAGATCCAATTTGACCAAGGGGGAAGAATATCAGGAGCTGCTATCAGAACTTACTTGCTGGAAAGATCTCGTGTTTGTCAGGTGTCTGATCCAGAGAGAAACTATCATTGCTTCTACATGCTTTGTGCTGCACCACCTGAGGAGGTGAAGAAGTATAAGTTGGGAAACCCAAAAGATTTCCATTATCTAAATCAATCAAACTGTCATGCTTTGGATGGAATTGATGATGCCAAAGAATATATCGCAACAAGAAAAGCAATGGAAGTTGTTGGGATAAGTTCGGAAGAGCAGGATGGAATATTTCGTGTTGTGGCTGCAATTCTTCATCTTGGAAACATTGAATTTTCAAAAGGGAAGGAGGCTGATTCTTCTGTTCCCAAAGATGAAAAATCTTGGTTCCATCTTAGAACTGCTGCGGAGCTTTTCATGTGTGATGAAAAGGCCTTGGAAGATTCTCTCTGCAAACGTGTGATCGTCACTCGTGATGAAACTATCACAAAGTGGCTGGATCCAAATTCTGCAGCCCTTAGCAGAGATGCTTTAGCAAAGATTGTATACTCAAGGTTGTTCGACTGGCTGGTGGACAAAATTAATAATTCAATTGGCCAGGATCCTGATTCGAAGTTTTTGATTGGAGTTCTGGATATCTACGGATTTGAGAGTTTCAAGACAAACAGTTTCGAGCAATTCTGCATCAACTTGACTAATGAAAAGCTTCAGCAGCATTTCAATCAGCATGTTTTCAAGATGGAGCAAGAAGAGTATACAAAAGAAGAAATTGATTGGAGCTATATTGATTTTGTTGATAATCAAGATGTCCTTGATCTCATTGAAAAGAAACCTGGTGGTATTATTGCCCTTCTGGATGAAGCATGTATGTTCCCCAGATCAACTCATGAAACATTTGCTCAAAAGTTGTATCAGACATTCAAAAATCATAAACGCTTCAGCAAGCCAAAATTAGCCCGGAGTGACTTCACAATTGCTCATTATGCTGGTGATGTCACCTATCAGACTGATTTATTTCTAGACAAAAATAAAGATTATGTTGTTGCTGAACACCAAGCACTCTTGAGTGCTTCCAAGTGCTCCTTCGTGGCATGTTTGTTTCCTCAATTAGCTGAAGAATCATCCAAATCTTCAAAGTTCTCATCAATAGGTTCTCGTTTCAAGCTACAATTGGTATCACTGCTGGAAACGCTAAGTGCTACTGAACCCCATTACATTCGATGTGTAAAGCCTAATAATCTTCTAAAGCCTGCTATCTTTGAGAATAAGAATATATTGCAACAATTACGATGTGGGGGAGTCATGGAGGCAATAAGGATAAGTTGTGCTGGTTTTCCAACAAGGAAAACTTTTGACGAATTTGTTGACCGTTTTGGACTCCTTGCTCCAGAAGTTTTGGATGGGAGTTCTGACGAAGTCGCTGCTTGCAAGAGGCTTATAGAGAAGGTTGGACTTAAGGGATACCAGATTGGTAAGACAAAGGTGTTTCTTAGAGCTGGTCAGATGGCTGAGCTTGATGCGCTCAGAACTGAGATCTTAGGGCGATCAGCAAGTATTATTCAGCGGAAGGTTCGTTCTTATCTGGCGCGTAGAAGTTTTGTATTGCTTCGGAGGTCAGCTATACGTCTGCAATCTGCTTGTAGAGGACAACTTGCTCGAGAAGTATTTGAGGGTTTGAGGAGAGAAGCTTCTTCTTTAATGATCCAAAGGAATTTGCGCATGCATCTCTGCAGGAAAGCTTACAAAGAAAAATACTCTTCAGCTGTTTCTATTCAAACTGGAATGCGTGGAATGGCTGCTCGCGATGAGCTACGGTTCAGAAGACGGTCTAAAGCAGCAATTATTATCCAGAGCTACTGTCGCAGATATTTGGCTCAGATGCACTATAAGAAGTTAAAGAAAGCAGCAATCACCACTCAATCCGCATGGAGAGGAAGAGTTGCCCGTAAGGAACTACGAAAGCTGAAGATGGCTGCAAGGGAAACAGGAGCTCTTCAAGCTGCGAAAAATAAATTGGAAAAGCAAGTCGAAGAATTAACATGGAGACTGCAGTTGGAGAAGCGCATGAGGGCTGACTTGGAAGAAGCTAAAACACAAGAAAATGAGAAGCTGCAATCTGCTTTGCAAGATATGCAGTTTCAATTGAAAGAATCAAAAGCGATGTTTGAGAAGGAACGTGAAGCTGCAAAGAAGGCTGCAGATATTATTCCAATTGTGAAGGAGGTTCCAGTTCTTGATAATGCAACGATTGAGAAAATTTCCAGTGAAAATGAAAAGCTCAAGGCGTTGGTAAATTCGCTGGAAAAGAAAATTGATGAAACAGAGAAAAAGTATGAAGAGGCGAATAGAGTTAGTGAAGAAAGGCTGAAGCAAGCATCGGAGGCAGAAACAAAAATTATTCAATTAAAGACTGCTATGCAGAGGCTTGAAGAAAAGTTCTCAAACATTGAATCTGAAAATCAGATTCTTCGGCAGCAGACCTTCCTCAAAACACCAGTAAAAAAAATGGCTGATCATCTTCCTATTGCAGCTGCTGAGAAACTGGAGAATGGTAACCATTTGGTTGAAGATAATCGAATTGATGAGCAGTTTGTAACACCAGTGAAATCACTGAAGAGAATTAGCTCAGAATCTGAAATTAAGTTGAGTAGATCGCATTTTGAACACCAACATGAGAACGTTGATGCTCTTGTCAGTTGTGTCATGAATAACATTGGGTTTAGTAATGGGAAGCCTGTAGCTGCATTTACCATTTATAAATGCCTTCTTCACTGGAAATCTTTTGAAGCTGAAAAAACAAGTGTATTTGATCGCCTAATTCAGATGATTGGATCTGCAATAGAGAATCAAGAAAACAATGATCATCTGGCCTACTGGTTGTCAAACACTTCTGCACTACTATTCCTGCTTCAACGAAGCTTGAAAGCTCCTGGTGCTCCCCGGAAACCTCCACCTTCAACATCCTTATTTGGAAGGATGACTATGGGTTTTCGTTCGTCTCCTTCTTCCAACAGTCTTGGATCTGCTCTTAAGGTCGTGCGTCAAGTGGATGCTAAATATCCAGCTTTGCTATTCAAGCAGCAGCTGACAGCATATGTTGAAAAAATATTTGGAATTATCCGAGATAACTTGAAAAAGGAGTTGACATCATTTCTTTCTATGTGTATCCAAGCACCAAGAATATCGAAAGGAGTACTACGGTCTGGAAGATCATTTGGGAAAGATACTCAAACAAATCACTGGCAGAGCATCATAGAAAGCCTTAACTTGCTTCTCTGTACATTGAAAGAAAATTTTGTTCCGCAAATTCTTATCCAGAATGTCTTTGTTCAAAACTTTTCGTATATTAATGTTCAACTCTTCAATAGCCTCCTCCTTCGTCGAGAATGTTGTACATTCAGCAATGGAGAATATGTAAAATCTGGGTTAGCTGAGTTGGAGCTCTGGTGCTGCCAGGCAAAAGAGGAGTATGCTGGTGCTTCTTGGGATGAGCTTAAACACATAAGACAAGCTGTTGGCTTCTTGGTTATACATCAAAAGTACAGAATTTCCTATGATGAAATCACCAATGATCTTTGCCCTATCCTGAGTGTCCAGCAACTTTATAGAATATGCACACTCTACTGGGACGACAACTATAACACTCGAAGTGTATCGCCCGATGTAATATCGAGTATGAGAGTGCTCATGACAGAGGACTCCAACAATGCAGTCAGCAGTTCCTTCCTATTGGATGACAATTCCAGCATCCCCTTCTCGGTCGAAGACCTATCGAACTCACTGCAAGAGAAAGATTTCTCGGGCGTGAAGCCGGCCGACGAACTACTCGAGAACCCAGCCTTCCAATTTTTACACGAGTAA 4569 41.12 MSSGYSTESSVLIFLASTTGLVVGSNVWLEDSEEAWIEGEVLEIRGEEIKVQCTSGKTVAVKAANVYPKDSEVPPCGVDDMTKLAYLHEPGVLHNLKLRYDINEIYTYTGNILIAVNPFTKLPHLYDSYMMAQYKGAAFGELSPHPFAVADAAYRLMVNEKKSQSILVSGESGAGKTESTKLLMRYLAYMGGRAASEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQGGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEEVKKYKLGNPKDFHYLNQSNCHALDGIDDAKEYIATRKAMEVVGISSEEQDGIFRVVAAILHLGNIEFSKGKEADSSVPKDEKSWFHLRTAAELFMCDEKALEDSLCKRVIVTRDETITKWLDPNSAALSRDALAKIVYSRLFDWLVDKINNSIGQDPDSKFLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIDFVDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTIAHYAGDVTYQTDLFLDKNKDYVVAEHQALLSASKCSFVACLFPQLAEESSKSSKFSSIGSRFKLQLVSLLETLSATEPHYIRCVKPNNLLKPAIFENKNILQQLRCGGVMEAIRISCAGFPTRKTFDEFVDRFGLLAPEVLDGSSDEVAACKRLIEKVGLKGYQIGKTKVFLRAGQMAELDALRTEILGRSASIIQRKVRSYLARRSFVLLRRSAIRLQSACRGQLAREVFEGLRREASSLMIQRNLRMHLCRKAYKEKYSSAVSIQTGMRGMAARDELRFRRRSKAAIIIQSYCRRYLAQMHYKKLKKAAITTQSAWRGRVARKELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRADLEEAKTQENEKLQSALQDMQFQLKESKAMFEKEREAAKKAADIIPIVKEVPVLDNATIEKISSENEKLKALVNSLEKKIDETEKKYEEANRVSEERLKQASEAETKIIQLKTAMQRLEEKFSNIESENQILRQQTFLKTPVKKMADHLPIAAAEKLENGNHLVEDNRIDEQFVTPVKSLKRISSESEIKLSRSHFEHQHENVDALVSCVMNNIGFSNGKPVAAFTIYKCLLHWKSFEAEKTSVFDRLIQMIGSAIENQENNDHLAYWLSNTSALLFLLQRSLKAPGAPRKPPPSTSLFGRMTMGFRSSPSSNSLGSALKVVRQVDAKYPALLFKQQLTAYVEKIFGIIRDNLKKELTSFLSMCIQAPRISKGVLRSGRSFGKDTQTNHWQSIIESLNLLLCTLKENFVPQILIQNVFVQNFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWCCQAKEEYAGASWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPDVISSMRVLMTEDSNNAVSSSFLLDDNSSIPFSVEDLSNSLQEKDFSGVKPADELLENPAFQFLHE* 1523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24995218 25009498 + Chy11G204580.1 Chy11g01878 237639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01878 1522 PRINTS Myosin heavy chain signature 163 188 IPR001609 GO:0003774|GO:0005524|GO:0016459
Chy11g01878 1522 PRINTS Myosin heavy chain signature 496 524 IPR001609 GO:0003774|GO:0005524|GO:0016459
Chy11g01878 1522 PRINTS Myosin heavy chain signature 106 125 IPR001609 GO:0003774|GO:0005524|GO:0016459
Chy11g01878 1522 PRINTS Myosin heavy chain signature 210 237 IPR001609 GO:0003774|GO:0005524|GO:0016459
Chy11g01878 1522 PRINTS Myosin heavy chain signature 443 471 IPR001609 GO:0003774|GO:0005524|GO:0016459
Chy11g01878 1522 Gene3D - 25 69 IPR008989 GO:0003774|GO:0005524|GO:0051015
Chy11g01878 1522 Pfam Myosin N-terminal SH3-like domain 24 65 IPR004009 GO:0003774|GO:0005524|GO:0016459
Chy11g01878 1522 Coils Coil 986 1062 - -
Chy11g01878 1522 SMART iq_5 819 841 IPR000048 GO:0005515
Chy11g01878 1522 SMART iq_5 796 818 IPR000048 GO:0005515
Chy11g01878 1522 SMART iq_5 867 889 IPR000048 GO:0005515
Chy11g01878 1522 SMART iq_5 771 793 IPR000048 GO:0005515
Chy11g01878 1522 SMART iq_5 748 770 IPR000048 GO:0005515
Chy11g01878 1522 SMART iq_5 844 866 IPR000048 GO:0005515
Chy11g01878 1522 ProSiteProfiles IQ motif profile. 797 826 IPR000048 GO:0005515
Chy11g01878 1522 Pfam Myosin head (motor domain) 78 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Chy11g01878 1522 Gene3D - 681 745 - -
Chy11g01878 1522 ProSiteProfiles IQ motif profile. 772 801 IPR000048 GO:0005515
Chy11g01878 1522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 799 IPR027417 -
Chy11g01878 1522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 801 897 IPR027417 -
Chy11g01878 1522 ProSiteProfiles IQ motif profile. 845 874 IPR000048 GO:0005515
Chy11g01878 1522 Gene3D - 453 637 - -
Chy11g01878 1522 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 22 71 IPR004009 GO:0003774|GO:0005524|GO:0016459
Chy11g01878 1522 Gene3D Myosin VI head, motor domain, U50 subdomain 326 615 - -
Chy11g01878 1522 ProSiteProfiles Dilute domain profile. 1173 1468 IPR002710 -
Chy11g01878 1522 SMART DIL_2 1343 1450 IPR002710 -
Chy11g01878 1522 Gene3D Kinesin motor domain 79 676 IPR036961 -
Chy11g01878 1522 Gene3D - 749 799 - -
Chy11g01878 1522 Gene3D - 800 847 - -
Chy11g01878 1522 Gene3D - 848 896 - -
Chy11g01878 1522 Pfam IQ calmodulin-binding motif 847 866 IPR000048 GO:0005515
Chy11g01878 1522 Pfam IQ calmodulin-binding motif 870 889 IPR000048 GO:0005515
Chy11g01878 1522 Pfam IQ calmodulin-binding motif 751 769 IPR000048 GO:0005515
Chy11g01878 1522 Pfam IQ calmodulin-binding motif 773 790 IPR000048 GO:0005515
Chy11g01878 1522 Pfam IQ calmodulin-binding motif 800 818 IPR000048 GO:0005515
Chy11g01878 1522 ProSiteProfiles IQ motif profile. 868 897 IPR000048 GO:0005515
Chy11g01878 1522 ProSiteProfiles IQ motif profile. 820 849 IPR000048 GO:0005515
Chy11g01878 1522 PANTHER MYOSIN 15 1520 - -
Chy11g01878 1522 Pfam DIL domain 1344 1447 IPR002710 -
Chy11g01878 1522 CDD MYSc_Myo11 90 734 IPR036018 -
Chy11g01878 1522 SMART MYSc_2a 71 747 IPR001609 GO:0003774|GO:0005524|GO:0016459
Chy11g01878 1522 PANTHER MYOSIN-14 15 1520 - -
Chy11g01878 1522 CDD MyosinXI_CBD 1124 1491 IPR037975 GO:0007015
Chy11g01878 1522 ProSiteProfiles Myosin motor domain profile. 76 746 IPR001609 GO:0003774|GO:0005524|GO:0016459
Chy11g01878 1522 Coils Coil 891 957 - -
Chy11g01878 1522 ProSiteProfiles IQ motif profile. 751 775 IPR000048 GO:0005515
Chy11g01878 1522 Gene3D - 266 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01222 Chy-Chr5:16631061 Chy11g01878 Chy-Chr11:24995218 0 dispersed
Chy06g00415 Chy-Chr6:2806607 Chy11g01878 Chy-Chr11:24995218 0 dispersed
Chy07g00731 Chy-Chr7:7416868 Chy11g01878 Chy-Chr11:24995218 2.68E-38 dispersed
Chy10g00655 Chy-Chr10:13051188 Chy11g01878 Chy-Chr11:24995218 0 dispersed
Chy12g01056 Chy-Chr12:15715110 Chy11g01878 Chy-Chr11:24995218 4.34E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01878 K10357 - csv:101208630 2942.91