Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g01883 | ATGGAGCTGGATGGCATCGATGGTATGCCATCCATGGATGTGATGGACGAGGAAGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGAATCAACAATAACGACAATCCCACAACCACAAGTGTCCATGAGCTTCTTGAATGTCCTGTTTGTACCAATTCTATGTATCCCCCAATTCATCAGTGTCCCAATGGACATACCCTCTGTTCTTCGTGTAAAACAAGGGTAGACAACCGTTGCCCGACATGCAGGCAAGAGCTTGGTGATATCAGATGTCTAGCATTAGAAAAAATAGCTGAATCGCTTAAACTGGCTTGTAAATTCTCCACATTTGGGTGCCAGGAGATATTGCCTTACTACAGCAAACTCAAACATGAATCTGCCTGTTACTATAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAATTGATGGCAATATTCCTTTCCTTGTTTCCCATCTTCGGGACGATCACAAGGTCGATATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTTGAAAACGCCACATGGATGCTAACTGTTTTCCACTGCTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCAGTTTACATGGCATTTCTGCGATTCATGGGGGACGAAACTGACGCTCGAAACTTCAGTTACAGCCTCGAGGTTGGTGGAAATGGTAGGAAGCTGATATGGGAAGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTTAGAGACAGCCATGACGGTCTCATTATACAACGAAACATGGCGCTGTTCTTTTCGGGAGGAGAAAGGAAAGAACTGAAGCTGCGGATCACAGGACGGATTTGGAAAGAACAAAATAAACAGTAA | 915 | 44.92 | MELDGIDGMPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFSTFGCQEILPYYSKLKHESACYYRPYTCPYAGSDCPIDGNIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNFSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ* | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 25044873 | 25047496 | - | Chy11G204630.1 | Chy11g01883 | 237644 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g01883 | 304 | PANTHER | UBIQUITIN LIGASE SINAT3 | 9 | 302 | - | - | |
Chy11g01883 | 304 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 9 | 302 | - | - | |
Chy11g01883 | 304 | CDD | Sina | 167 | 295 | - | - | |
Chy11g01883 | 304 | ProSiteProfiles | Zinc finger SIAH-type profile. | 106 | 166 | IPR013010 | GO:0008270 | |
Chy11g01883 | 304 | SUPERFAMILY | RING/U-box | 47 | 111 | - | - | |
Chy11g01883 | 304 | SUPERFAMILY | TRAF domain-like | 106 | 298 | - | - | |
Chy11g01883 | 304 | CDD | RING-HC_SIAHs | 51 | 89 | - | - | |
Chy11g01883 | 304 | ProSiteProfiles | Zinc finger RING-type profile. | 53 | 89 | IPR001841 | - | |
Chy11g01883 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 95 | IPR013083 | - | |
Chy11g01883 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 161 | IPR013083 | - | |
Chy11g01883 | 304 | Pfam | Seven in absentia protein family | 95 | 294 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Chy11g01883 | 304 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 165 | 294 | IPR008974 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy06g01203 | Chy-Chr6:10700024 | Chy11g01883 | Chy-Chr11:25044873 | 2.09E-179 | dispersed | |
Chy06g01204 | Chy-Chr6:10709309 | Chy11g01883 | Chy-Chr11:25044873 | 2.15E-179 | dispersed | |
Chy09g00504 | Chy-Chr9:5005195 | Chy11g01883 | Chy-Chr11:25044873 | 4.05E-20 | dispersed | |
Chy10g01356 | Chy-Chr10:17806951 | Chy11g01883 | Chy-Chr11:25044873 | 2.59E-165 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g01883 | K04506 | - | csv:101209363 | 656.366 |