Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01883 ATGGAGCTGGATGGCATCGATGGTATGCCATCCATGGATGTGATGGACGAGGAAGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGAATCAACAATAACGACAATCCCACAACCACAAGTGTCCATGAGCTTCTTGAATGTCCTGTTTGTACCAATTCTATGTATCCCCCAATTCATCAGTGTCCCAATGGACATACCCTCTGTTCTTCGTGTAAAACAAGGGTAGACAACCGTTGCCCGACATGCAGGCAAGAGCTTGGTGATATCAGATGTCTAGCATTAGAAAAAATAGCTGAATCGCTTAAACTGGCTTGTAAATTCTCCACATTTGGGTGCCAGGAGATATTGCCTTACTACAGCAAACTCAAACATGAATCTGCCTGTTACTATAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAATTGATGGCAATATTCCTTTCCTTGTTTCCCATCTTCGGGACGATCACAAGGTCGATATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTTGAAAACGCCACATGGATGCTAACTGTTTTCCACTGCTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCAGTTTACATGGCATTTCTGCGATTCATGGGGGACGAAACTGACGCTCGAAACTTCAGTTACAGCCTCGAGGTTGGTGGAAATGGTAGGAAGCTGATATGGGAAGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTTAGAGACAGCCATGACGGTCTCATTATACAACGAAACATGGCGCTGTTCTTTTCGGGAGGAGAAAGGAAAGAACTGAAGCTGCGGATCACAGGACGGATTTGGAAAGAACAAAATAAACAGTAA 915 44.92 MELDGIDGMPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFSTFGCQEILPYYSKLKHESACYYRPYTCPYAGSDCPIDGNIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNFSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25044873 25047496 - Chy11G204630.1 Chy11g01883 237644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01883 304 PANTHER UBIQUITIN LIGASE SINAT3 9 302 - -
Chy11g01883 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 9 302 - -
Chy11g01883 304 CDD Sina 167 295 - -
Chy11g01883 304 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270
Chy11g01883 304 SUPERFAMILY RING/U-box 47 111 - -
Chy11g01883 304 SUPERFAMILY TRAF domain-like 106 298 - -
Chy11g01883 304 CDD RING-HC_SIAHs 51 89 - -
Chy11g01883 304 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Chy11g01883 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 95 IPR013083 -
Chy11g01883 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 161 IPR013083 -
Chy11g01883 304 Pfam Seven in absentia protein family 95 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Chy11g01883 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 294 IPR008974 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01203 Chy-Chr6:10700024 Chy11g01883 Chy-Chr11:25044873 2.09E-179 dispersed
Chy06g01204 Chy-Chr6:10709309 Chy11g01883 Chy-Chr11:25044873 2.15E-179 dispersed
Chy09g00504 Chy-Chr9:5005195 Chy11g01883 Chy-Chr11:25044873 4.05E-20 dispersed
Chy10g01356 Chy-Chr10:17806951 Chy11g01883 Chy-Chr11:25044873 2.59E-165 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01883 K04506 - csv:101209363 656.366