Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01928 ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTTTCAACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCAGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATCCATTCAAGTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGCTGCACGAAGGAAGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCTAACTTCACGTCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCCGACAAGCAGAGGGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCATGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAATGCAATTGCCTGCAGACCGACGAAGTCAAGCACATCATACAAAAAGCCTAGGCTTGAGATGGTTGACGACGAAGAGTTTTTTACGGTTCCTGATCTTGGATGA 714 45.66 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGIRVAMSSSCTKEVDKVKMEPPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQREQLEFGELEWLAEMGLFGEQVPHEALAAAEVPELPTSHSGNAIACRPTKSSTSYKKPRLEMVDDEEFFTVPDLG* 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25396317 25398421 + Chy11G205080.1 Chy11g01928 237689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01928 237 SMART bboxneu5 52 99 IPR000315 GO:0008270
Chy11g01928 237 SMART bboxneu5 4 47 IPR000315 GO:0008270
Chy11g01928 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Chy11g01928 237 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 237 - -
Chy11g01928 237 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Chy11g01928 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Chy11g01928 237 Gene3D Classic Zinc Finger 1 92 - -
Chy11g01928 237 MobiDBLite consensus disorder prediction 116 135 - -
Chy11g01928 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Chy11g01928 237 CDD Bbox1_BBX-like 5 47 - -
Chy11g01928 237 CDD Bbox1_BBX-like 56 98 - -
Chy11g01928 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01928 - - - csv:101215327 472.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00591 Chy-Chr2:3597169 Chy11g01928 Chy-Chr11:25396317 5.20E-26 dispersed
Chy07g00978 Chy-Chr7:14401365 Chy11g01928 Chy-Chr11:25396317 1.42E-44 dispersed
Chy11g00343 Chy-Chr11:3109953 Chy11g01928 Chy-Chr11:25396317 7.07E-37 dispersed
Chy11g01928 Chy-Chr11:25396317 Chy03g01067 Chy-Chr3:14104800 1.67E-17 dispersed
Chy11g01928 Chy-Chr11:25396317 Chy03g01411 Chy-Chr3:16842241 5.56E-37 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g02708 . 1 376 Orphan Transcription Factor Family AT5G61850 69.3 2.1e-122 436.0
Chy11g01928 . 1 167 Orphan Transcription Factor Family AT1G06040 68.4 9.6e-61 229.9
Chy07g00978 . 1 126 Orphan Transcription Factor Family AT1G06040 61.9 7.9e-39 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18800 PF00643 zf-B_box 5.20E-08 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01928 Chy_Chr11 FPKM 1.247389 1.233279 0.0 0.0 1.026262 0.0 1.353329 0.0 0.0 0.0