Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01928 ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTTTCAACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCAGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATCCATTCAAGTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGCTGCACGAAGGAAGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCTAACTTCACGTCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCCGACAAGCAGAGGGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCATGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAATGCAATTGCCTGCAGACCGACGAAGTCAAGCACATCATACAAAAAGCCTAGGCTTGAGATGGTTGACGACGAAGAGTTTTTTACGGTTCCTGATCTTGGATGA 714 45.66 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGIRVAMSSSCTKEVDKVKMEPPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQREQLEFGELEWLAEMGLFGEQVPHEALAAAEVPELPTSHSGNAIACRPTKSSTSYKKPRLEMVDDEEFFTVPDLG* 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25396317 25398421 + Chy11G205080.1 Chy11g01928 237689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01928 237 SMART bboxneu5 52 99 IPR000315 GO:0008270
Chy11g01928 237 SMART bboxneu5 4 47 IPR000315 GO:0008270
Chy11g01928 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Chy11g01928 237 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 237 - -
Chy11g01928 237 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Chy11g01928 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Chy11g01928 237 Gene3D Classic Zinc Finger 1 92 - -
Chy11g01928 237 MobiDBLite consensus disorder prediction 116 135 - -
Chy11g01928 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Chy11g01928 237 CDD Bbox1_BBX-like 5 47 - -
Chy11g01928 237 CDD Bbox1_BBX-like 56 98 - -
Chy11g01928 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00591 Chy-Chr2:3597169 Chy11g01928 Chy-Chr11:25396317 5.20E-26 dispersed
Chy07g00978 Chy-Chr7:14401365 Chy11g01928 Chy-Chr11:25396317 1.42E-44 dispersed
Chy11g00343 Chy-Chr11:3109953 Chy11g01928 Chy-Chr11:25396317 7.07E-37 dispersed
Chy11g01928 Chy-Chr11:25396317 Chy03g01067 Chy-Chr3:14104800 1.67E-17 dispersed
Chy11g01928 Chy-Chr11:25396317 Chy03g01411 Chy-Chr3:16842241 5.56E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18800 PF00643 zf-B_box 5.20E-08 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01928 - - csv:101215327 472.241