Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g01928 | ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTTTCAACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCAGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATCCATTCAAGTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGCTGCACGAAGGAAGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCTAACTTCACGTCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCCGACAAGCAGAGGGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCATGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAATGCAATTGCCTGCAGACCGACGAAGTCAAGCACATCATACAAAAAGCCTAGGCTTGAGATGGTTGACGACGAAGAGTTTTTTACGGTTCCTGATCTTGGATGA | 714 | 45.66 | MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGIRVAMSSSCTKEVDKVKMEPPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQREQLEFGELEWLAEMGLFGEQVPHEALAAAEVPELPTSHSGNAIACRPTKSSTSYKKPRLEMVDDEEFFTVPDLG* | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 25396317 | 25398421 | + | Chy11G205080.1 | Chy11g01928 | 237689 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g01928 | 237 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270 | |
Chy11g01928 | 237 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Chy11g01928 | 237 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Chy11g01928 | 237 | PANTHER | B-BOX ZINC FINGER PROTEIN 24 | 1 | 237 | - | - | |
Chy11g01928 | 237 | Pfam | B-box zinc finger | 4 | 44 | IPR000315 | GO:0008270 | |
Chy11g01928 | 237 | Pfam | B-box zinc finger | 53 | 95 | IPR000315 | GO:0008270 | |
Chy11g01928 | 237 | Gene3D | Classic Zinc Finger | 1 | 92 | - | - | |
Chy11g01928 | 237 | MobiDBLite | consensus disorder prediction | 116 | 135 | - | - | |
Chy11g01928 | 237 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270 | |
Chy11g01928 | 237 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Chy11g01928 | 237 | CDD | Bbox1_BBX-like | 56 | 98 | - | - | |
Chy11g01928 | 237 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 237 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g00591 | Chy-Chr2:3597169 | Chy11g01928 | Chy-Chr11:25396317 | 5.20E-26 | dispersed | |
Chy07g00978 | Chy-Chr7:14401365 | Chy11g01928 | Chy-Chr11:25396317 | 1.42E-44 | dispersed | |
Chy11g00343 | Chy-Chr11:3109953 | Chy11g01928 | Chy-Chr11:25396317 | 7.07E-37 | dispersed | |
Chy11g01928 | Chy-Chr11:25396317 | Chy03g01067 | Chy-Chr3:14104800 | 1.67E-17 | dispersed | |
Chy11g01928 | Chy-Chr11:25396317 | Chy03g01411 | Chy-Chr3:16842241 | 5.56E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18800 | PF00643 | zf-B_box | 5.20E-08 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g01928 | - | - | csv:101215327 | 472.241 |