Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01960 ATGATGAACCAACCTGGAAAATGGGTGGTGCTTGTGGCGGCGATATGGATTCAGGCATTTGCTGGCACAAATTTTGATTTCCCTTCTTATTCTTCCGATCTGAAGGCGGCTCTCGGGATGTCGCAGGTGCAGCTCAACTATCTGGCGGTGGCTTCCGACCTTGGTAAGGCCTTTGGGTGGTGCTCTGGTGTTGCTCTCTTGTATTTTCCTTTGTGGGTTGTGATGTTCATGGCTGCTTCCATGGGATTTCTTGGCTATGGCTTTCAATGGCTTCTCCTTCAAAGGATTATCTCTCTGCCTTACTCCATGGTTTATCTTCTCTGCCTGATGGCTGGATGTAGTATTTGCTGGTTCAATACGGTCTGCTATATCTCATGCATCCAAAATTTTCCAGCCAACCGTGCGCTTGCACTGTCCTTGATTGTCAGCTTCAATGGCGTCAGTGCAGCTCTATACACTCTAATTGCCAATGCAATAGACCCCGGTGATGCCAGCTTGTACCTCTTCCTAAATGCACTGGTTCCTCTTATCATCTCTGTCGTTGCCCTCCTCCCAATGCTTCATAAGCCACCGGTTCAGCCGTCCTCTGATGATGCCATCCGTCATGACTCCCTCATCTTCATCTGTTTATACATCACGGCCATTATCACAGGGTTGTACTTAATCACCTTCAATTCCATGCCTTCCAACAAATACGGGTCCCAAATTCTGTTAGCAGGGGCTTTTGCCCTTTTACTAGTTCCTCTTTGTTTGCCAGGAGTTCTGAGTACACACAGGTGGTTGGTTCGGATCATATCCACCACTTTGAACTGTCTTATTCACTCTAGATTTAGCCTTGTTGATCATGAGCTTCACCAGGAGCTCATCACTATTGAATCAGAACGAAATAGCATGAAGGGCATCGTCCCTTTTGAATCTAAAGAGAAGGAAAGCATTTCAAGGAAGGTGATGGAGAAAGAGAACTTGGTAGTGCTTGAAGAAGAGCATTCCGCTAAGATGCTCATGCGACAGTTGGATTTTTGGCTCTATTATGCTGCATACTTTTGTGGTGGGACGATTGGGTTGGTTTACAGCAACAGTCTTGGGCAAATTGCACAGTCGCTTGGATACAGTTCATCAACAAGTTCACTTGTAACACTCTACTCTTCTTGCTCCTTCTTTGGGCGGTTAATCTCAGCGGCCCCAGATTTCATGCGTGAAAGGGGGCACTTCGCGAGAACAGGGTGGCTAGCCATTGCACTTGTGCCAACTCCAATCGCCTTCATTCTACTTGCTGCGTCAGGCAGCAAAATCGCATTACAAGTCGGCACTAGTTTGATCGGCCTAAGCTCGGGATTCATATTCTCAGCCTCAGTCTCAATCACATCAGAATTATTCGGACCGAACAGCTCAGGAGTCAACCACAACATCCTCATCACTAACATCCCTCTCGGCTCGTTCCTCTACGGCGTCCTGGCAGCAATGGCATACGATTCAAACGCCGGAAGCTCTCACCAGACGTCAGCGTTGGGGGATGCAGTAGTGTGCATCGGCCAAAATTGCTATCTGATGACGTTCGTATGGTGGGCTTGCATCTCCATCTTCGGCCTTGCTTCTAGCTTCTTGCTATTCCGACGGACGAAATCGGCTTACGACCGCCATTACGACAGCAACCCAAGCAAGATGCAACCATTTTAG 1677 47.94 MMNQPGKWVVLVAAIWIQAFAGTNFDFPSYSSDLKAALGMSQVQLNYLAVASDLGKAFGWCSGVALLYFPLWVVMFMAASMGFLGYGFQWLLLQRIISLPYSMVYLLCLMAGCSICWFNTVCYISCIQNFPANRALALSLIVSFNGVSAALYTLIANAIDPGDASLYLFLNALVPLIISVVALLPMLHKPPVQPSSDDAIRHDSLIFICLYITAIITGLYLITFNSMPSNKYGSQILLAGAFALLLVPLCLPGVLSTHRWLVRIISTTLNCLIHSRFSLVDHELHQELITIESERNSMKGIVPFESKEKESISRKVMEKENLVVLEEEHSAKMLMRQLDFWLYYAAYFCGGTIGLVYSNSLGQIAQSLGYSSSTSSLVTLYSSCSFFGRLISAAPDFMRERGHFARTGWLAIALVPTPIAFILLAASGSKIALQVGTSLIGLSSGFIFSASVSITSELFGPNSSGVNHNILITNIPLGSFLYGVLAAMAYDSNAGSSHQTSALGDAVVCIGQNCYLMTFVWWACISIFGLASSFLLFRRTKSAYDRHYDSNPSKMQPF* 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25607842 25610566 - Chy11G205400.1 Chy11g01960 237721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01960 558 Pfam Nodulin-like 7 252 IPR010658 -
Chy11g01960 558 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 2 552 - -
Chy11g01960 558 SUPERFAMILY MFS general substrate transporter 6 542 IPR036259 -
Chy11g01960 558 PANTHER NODULIN-LIKE/MFS TRANSPORTER 2 552 - -
Chy11g01960 558 Gene3D MFS general substrate transporter like domains 292 532 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01960 - - - csv:101222963 1074.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01110 Chy-Chr7:16055483 Chy11g01960 Chy-Chr11:25607842 0 dispersed
Chy11g01960 Chy-Chr11:25607842 Chy12g00344 Chy-Chr12:3621882 1.93E-86 dispersed
Chy11g01960 Chy-Chr11:25607842 Chy11g00271 Chy-Chr11:2518261 6.29E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g49 . . . . . . . . Cmo08g00953 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01960 . . . . . . . . . . . . Cma08g00983 . Car08g00862 . Cpe17g00288 . . . . . . . . . . . . . . . Lsi09g01880 . . Cme11g02487
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy07g01095 . 1 757 Nodulin-like Gene Family AT4G19180 61.0 3.2e-251 864.8
Chy07g00601 . 24 283 Nodulin-like Gene Family AT3G45870 70.8 2.8e-99 358.6
Chy09g00320 CCT 12 368 Nodulin-like Gene Family AT3G28050 60.7 1.8e-117 419.5
Chy09g00320 CCT 127 335 Nodulin-like Gene Family AT3G28080 51.0 4.1e-51 198.4
Chy06g02058 . 1 340 Nodulin-like Gene Family AT5G47470 59.1 2.3e-104 375.9
Chy09g00320 CCT 10 335 Nodulin-like Gene Family AT5G40230 56.5 1.1e-95 347.1
Chy04g01478 . 4 335 Nodulin-like Gene Family AT5G40230 50.6 3.1e-85 312.4
Chy09g00320 CCT 12 335 Nodulin-like Gene Family AT5G40240 55.2 4.0e-93 338.6
Chy04g01479 CCT,ECH 1 355 Nodulin-like Gene Family AT5G40240 50.8 4.1e-90 328.6
Chy04g00454 CCT,ECH 19 276 Nodulin-like Gene Family AT3G53210 62.4 1.7e-85 312.8
Chy03g01417 CCT,ECH 16 283 Nodulin-like Gene Family AT3G53210 57.1 1.6e-83 306.2
Chy02g02335 . 9 260 Nodulin-like Gene Family AT3G53210 50.4 9.9e-70 260.4
Chy08g00779 . 99 332 Nodulin-like Gene Family AT2G37450 65.8 9.2e-84 307.0
Chy10g00555 . 98 360 Nodulin-like Gene Family AT2G37450 52.3 9.3e-68 253.8
Chy08g00779 . 12 341 Nodulin-like Gene Family AT2G37460 68.8 5.3e-125 444.5
Chy10g00555 . 11 335 Nodulin-like Gene Family AT2G37460 56.6 2.8e-97 352.4
Chy10g00554 . 11 335 Nodulin-like Gene Family AT2G37460 54.5 1.5e-95 346.7
Chy07g00654 . 15 352 Nodulin-like Gene Family AT2G37460 52.2 2.0e-95 346.3
Chy04g01678 . 12 339 Nodulin-like Gene Family AT2G37460 51.7 1.1e-85 313.9
Chy09g00770 . 97 281 Nodulin-like Gene Family AT2G37460 51.9 1.1e-45 181.0
Chy03g01417 CCT,ECH 1 397 Nodulin-like Gene Family AT1G75500 71.6 4.4e-159 557.8
Chy04g00454 CCT,ECH 19 392 Nodulin-like Gene Family AT1G75500 74.3 1.1e-149 526.6
Chy02g02335 . 9 340 Nodulin-like Gene Family AT1G75500 61.2 2.5e-114 409.1
Chy10g00923 CCT 12 367 Nodulin-like Gene Family AT1G60050 52.8 6.0e-97 351.3
Chy08g00779 . 12 333 Nodulin-like Gene Family AT5G13670 52.6 1.5e-90 330.1
Chy10g00554 . 9 349 Nodulin-like Gene Family AT2G39510 59.5 4.2e-114 408.3
Chy08g00779 . 13 353 Nodulin-like Gene Family AT2G39510 59.4 2.7e-113 405.6
Chy10g00555 . 12 336 Nodulin-like Gene Family AT2G39510 60.6 3.6e-110 395.2
Chy09g00760 . 8 331 Nodulin-like Gene Family AT2G39510 57.2 1.2e-108 390.2
Chy07g00654 . 18 370 Nodulin-like Gene Family AT2G39510 54.5 9.0e-101 364.0
Chy04g01678 . 16 337 Nodulin-like Gene Family AT2G39510 52.9 7.1e-90 327.8
Chy08g00232 . 16 342 Nodulin-like Gene Family AT2G39510 50.9 1.0e-88 323.9
Chy10g00710 . 14 315 Nodulin-like Gene Family AT2G39510 50.3 1.6e-81 300.1
Chy09g00770 . 96 281 Nodulin-like Gene Family AT2G39510 58.6 4.0e-56 215.7
Chy04g01479 CCT,ECH 1 335 Nodulin-like Gene Family AT4G15540 50.1 3.4e-86 315.5
Chy03g00876 . 20 277 Nodulin-like Gene Family AT4G08290 63.8 4.6e-89 324.7
Chy07g00654 . 14 265 Nodulin-like Gene Family AT4G08290 52.6 1.7e-72 269.6
Chy07g00654 . 12 357 Nodulin-like Gene Family AT4G08300 65.8 5.8e-124 441.0
Chy03g00876 . 27 349 Nodulin-like Gene Family AT4G08300 50.9 2.7e-89 325.9
Chy11g00066 . 3 248 Nodulin-like Gene Family AT5G64700 61.1 1.3e-74 276.6
Chy11g00065 . 1 224 Nodulin-like Gene Family AT5G64700 53.3 6.9e-55 211.1
Chy10g00710 . 10 316 Nodulin-like Gene Family AT5G07050 72.9 9.9e-130 460.3
Chy04g01678 . 10 381 Nodulin-like Gene Family AT5G07050 61.1 1.3e-124 443.4
Chy08g00232 . 6 342 Nodulin-like Gene Family AT5G07050 63.6 4.2e-120 428.3
Chy04g01676 . 8 337 Nodulin-like Gene Family AT5G07050 58.1 5.8e-106 381.3
Chy08g00779 . 11 343 Nodulin-like Gene Family AT5G07050 51.9 1.8e-94 343.2
Chy07g00654 . 18 338 Nodulin-like Gene Family AT5G07050 52.1 2.0e-93 339.7
Chy08g00232 . 13 360 Nodulin-like Gene Family AT3G56620 56.3 1.7e-102 369.8
Chy04g01678 . 12 343 Nodulin-like Gene Family AT3G56620 53.1 1.3e-99 360.1
Chy10g00710 . 15 316 Nodulin-like Gene Family AT3G56620 57.6 5.0e-91 331.6
Chy10g00923 CCT 12 375 Nodulin-like Gene Family AT1G70260 52.9 4.3e-103 371.7
Chy12g00604 . 3 331 Nodulin-like Gene Family AT1G09380 61.8 3.3e-111 398.7
Chy05g01017 . 1 302 Nodulin-like Gene Family AT1G09380 59.3 1.1e-103 373.6
Chy08g00232 . 13 355 Nodulin-like Gene Family AT2G40900 58.6 4.4e-106 381.7
Chy04g01678 . 9 352 Nodulin-like Gene Family AT2G40900 54.8 5.4e-104 374.8
Chy04g01676 . 10 342 Nodulin-like Gene Family AT2G40900 50.7 2.5e-93 339.3
Chy10g00710 . 15 316 Nodulin-like Gene Family AT2G40900 57.9 2.5e-93 339.3
Chy02g02335 . 1 339 Nodulin-like Gene Family AT3G18200 69.3 4.8e-126 448.0
Chy03g01417 CCT,ECH 16 363 Nodulin-like Gene Family AT3G18200 56.9 3.0e-107 385.6
Chy04g00454 CCT,ECH 19 356 Nodulin-like Gene Family AT3G18200 54.7 6.0e-100 361.3
Chy07g00654 . 12 362 Nodulin-like Gene Family AT1G44800 64.1 5.2e-125 444.5
Chy03g00876 . 27 349 Nodulin-like Gene Family AT1G44800 50.5 1.3e-91 333.6
Chy08g00779 . 13 333 Nodulin-like Gene Family AT1G44800 50.3 3.3e-87 318.9
Chy07g00601 . 108 378 Nodulin-like Gene Family AT5G45370 67.6 7.9e-102 367.1
Chy07g00654 . 12 315 Nodulin-like Gene Family AT1G21890 64.7 1.5e-113 406.4
Chy04g01678 . 8 315 Nodulin-like Gene Family AT1G21890 51.6 1.7e-85 313.2
Chy08g00232 . 5 321 Nodulin-like Gene Family AT1G21890 53.5 1.6e-83 306.6
Chy08g00779 . 11 313 Nodulin-like Gene Family AT1G21890 51.0 3.3e-81 298.9
Chy07g01584 . 1 566 Nodulin-like Gene Family AT1G80530 58.9 6.7e-185 644.0
Chy07g01110 . 1 416 Nodulin-like Gene Family AT4G19450 67.4 8.0e-151 530.4
Chy11g01960 . 1 399 Nodulin-like Gene Family AT4G19450 57.0 6.2e-127 451.1
Chy02g02527 . 5 538 Nodulin-like Gene Family AT1G74780 58.1 3.8e-177 618.2
Chy02g02529 . 10 525 Nodulin-like Gene Family AT1G74780 57.5 2.1e-167 585.9
Chy11g00271 CCT 9 534 Nodulin-like Gene Family AT4G34950 69.5 1.2e-216 749.6
Chy01g00687 CCT 10 515 Nodulin-like Gene Family AT4G34950 65.5 1.4e-201 699.5
Chy03g00103 . 6 592 Nodulin-like Gene Family AT5G14120 68.6 1.7e-231 798.9
Chy11g00271 CCT 1 384 Nodulin-like Gene Family AT2G16660 66.8 3.4e-143 505.0
Chy01g00687 CCT 4 368 Nodulin-like Gene Family AT2G16660 65.5 3.9e-139 491.5
Chy10g01293 . 14 564 Nodulin-like Gene Family AT2G39210 71.3 2.1e-224 775.4
Chy10g01289 . 14 580 Nodulin-like Gene Family AT2G39210 66.9 1.0e-215 746.5
Chy03g00916 . 31 601 Nodulin-like Gene Family AT2G39210 62.9 2.1e-208 722.2
Chy10g01292 . 13 579 Nodulin-like Gene Family AT2G39210 65.0 1.4e-207 719.5
Chy10g01286 . 3 560 Nodulin-like Gene Family AT2G39210 63.4 4.5e-203 704.5
Chy04g02032 . 17 579 Nodulin-like Gene Family AT2G39210 60.9 1.6e-195 679.5
Chy12g00832 . 22 578 Nodulin-like Gene Family AT2G39210 57.8 2.9e-186 648.7
Chy04g02035 . 11 548 Nodulin-like Gene Family AT2G39210 58.0 3.8e-178 621.7
Chy08g00356 . 15 539 Nodulin-like Gene Family AT2G39210 51.6 2.8e-152 535.8
Chy10g01290 . 2 219 Nodulin-like Gene Family AT2G39210 68.3 4.1e-79 292.7
Chy04g02030 . 1 257 Nodulin-like Gene Family AT2G39210 57.0 2.8e-72 270.0
Chy10g01291 . 1 193 Nodulin-like Gene Family AT2G39210 61.0 1.7e-69 260.8
Chy10g01287 . 2 193 Nodulin-like Gene Family AT2G39210 66.8 1.2e-65 248.1
Chy08g00875 . 1 189 Nodulin-like Gene Family AT2G39210 60.8 3.3e-60 229.9
Chy08g00876 . 26 165 Nodulin-like Gene Family AT2G39210 65.7 1.3e-53 208.0
Chy10g01288 . 99 236 Nodulin-like Gene Family AT2G39210 65.0 1.9e-36 151.0
Chy07g01110 . 6 564 Nodulin-like Gene Family AT3G01630 53.3 1.3e-151 533.5
Chy11g01960 . 7 546 Nodulin-like Gene Family AT3G01630 50.7 3.9e-140 495.4
Chy03g00103 . 6 429 Nodulin-like Gene Family AT3G01930 68.9 1.2e-165 579.7
Chy02g02527 . 4 541 Nodulin-like Gene Family AT1G18940 54.0 6.6e-166 580.9
Chy02g02529 . 7 527 Nodulin-like Gene Family AT1G18940 52.7 6.4e-153 537.7
Chy02g02527 . 5 539 Nodulin-like Gene Family AT2G34350 55.5 4.4e-162 568.2
Chy02g02529 . 11 525 Nodulin-like Gene Family AT2G34350 54.7 1.3e-150 530.0
Chy12g00832 . 16 581 Nodulin-like Gene Family AT2G28120 69.8 7.6e-224 773.5
Chy10g01293 . 18 561 Nodulin-like Gene Family AT2G28120 61.3 5.0e-191 664.5
Chy03g00916 . 29 585 Nodulin-like Gene Family AT2G28120 58.9 2.2e-183 639.0
Chy10g01289 . 17 560 Nodulin-like Gene Family AT2G28120 58.9 2.2e-183 639.0
Chy10g01292 . 8 562 Nodulin-like Gene Family AT2G28120 57.2 4.2e-182 634.8
Chy04g02032 . 14 565 Nodulin-like Gene Family AT2G28120 58.8 3.9e-180 628.2
Chy10g01286 . 1 563 Nodulin-like Gene Family AT2G28120 56.9 2.0e-176 615.9
Chy12g00848 . 13 569 Nodulin-like Gene Family AT2G28120 56.1 7.2e-174 607.4
Chy04g02035 . 15 556 Nodulin-like Gene Family AT2G28120 55.3 3.8e-167 585.1
Chy12g00839 . 3 572 Nodulin-like Gene Family AT2G28120 52.8 2.1e-165 579.3
Chy12g00847 . 18 555 Nodulin-like Gene Family AT2G28120 50.7 4.4e-155 545.0
Chy08g00356 . 9 547 Nodulin-like Gene Family AT2G28120 51.2 1.0e-151 533.9
Chy12g00834 . 9 547 Nodulin-like Gene Family AT2G28120 50.5 1.9e-150 529.6
Chy10g01290 . 2 200 Nodulin-like Gene Family AT2G28120 62.8 3.1e-68 256.5
Chy04g02030 . 1 250 Nodulin-like Gene Family AT2G28120 51.6 1.4e-65 247.7
Chy10g01287 . 2 207 Nodulin-like Gene Family AT2G28120 57.5 1.6e-59 227.6
Chy10g01291 . 1 191 Nodulin-like Gene Family AT2G28120 53.7 5.5e-57 219.2
Chy08g00875 . 1 189 Nodulin-like Gene Family AT2G28120 58.2 1.2e-56 218.0
Chy08g00876 . 24 165 Nodulin-like Gene Family AT2G28120 64.8 2.2e-50 197.2
Chy07g01110 . 1 569 Nodulin-like Gene Family AT1G31470 57.4 2.0e-171 599.4
Chy11g01960 . 7 546 Nodulin-like Gene Family AT1G31470 57.0 5.4e-161 564.7
Chy03g00517 . 18 218 Nodulin-like Gene Family AT1G76800 69.7 6.2e-69 257.3
Chy05g00486 . 1 197 Nodulin-like Gene Family AT1G76800 60.4 7.6e-59 223.8
Chy01g01287 . 28 187 Nodulin-like Gene Family AT1G76800 63.1 6.5e-50 194.1
Chy05g00486 . 3 196 Nodulin-like Gene Family AT3G25190 67.3 1.1e-63 240.0
Chy03g00517 . 24 217 Nodulin-like Gene Family AT3G25190 62.9 3.8e-59 224.9
Chy03g00517 . 4 218 Nodulin-like Gene Family AT1G21140 70.7 2.5e-73 271.9
Chy05g00486 . 9 197 Nodulin-like Gene Family AT1G21140 64.6 5.2e-63 237.7
Chy01g01287 . 30 187 Nodulin-like Gene Family AT1G21140 61.8 3.3e-49 191.8
Chy03g00517 . 7 214 Nodulin-like Gene Family AT3G43630 72.6 1.2e-72 269.6
Chy05g00486 . 9 193 Nodulin-like Gene Family AT3G43630 64.0 1.2e-59 226.5
Chy01g01287 . 30 187 Nodulin-like Gene Family AT3G43630 61.8 1.9e-49 192.6
Chy03g00517 . 4 218 Nodulin-like Gene Family AT3G43660 69.8 1.6e-72 269.2
Chy05g00486 . 9 197 Nodulin-like Gene Family AT3G43660 62.4 2.8e-61 231.9
Chy01g01287 . 26 187 Nodulin-like Gene Family AT3G43660 59.9 6.5e-50 194.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013259 0 1 0 0 0 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g01960 Chy_Chr11 FPKM 3.25577 2.876978 9.15161 8.676577 6.062626 6.397348 5.828032 16.877512 16.385883 16.305065