Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01975 ATGGATGGACCAACTGGTCGCAGCGGCGGTGGCATGGATATGAATGTACCGAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCGGAACATGCTTTAACTGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGAAAGATAAAAAACTTGGATATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGATTGTTCATGCATCCTCACATTATACGGCTCTATGAGGTTATAGAGACCCCATCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGGGAGCTCTTTGACTATATTGTAGAAAAGGGAAGGTTGCAGGAGGATGAAGCCCGTAATTTTTTCCAACAGATCATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGATCTCAAGCCAGAGAACTTGCTTTTAGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTTTGAGCAACATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCAGAGGTCATCTCCGGGAAATTATATGCTGGACCTGAAGTAGATGTCTGGAGTTGTGGTGTGATTTTGTATGCTCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTATTCAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATTCCTAGTATGCTAGTGGTTGACCCAATGAAGCGCATCACGATCCCCGAGATTCGCCAGCACCCATGGTTTCAGGCTCATCTTCCACGCTATTTGGCCGTGCCTCCACCTGATACAATGCAACAGGCAAAAAAGATCGATGAAGACATTCTTCAGGAGGTTGTAAAGATGGGATTTGACAGGAACCAGCTGGTGGAATCTCTTCGTAACCGAATTCAAAATGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTCCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACTGGATTCAACCGTATGCACTCTGGTGATCCTACAAATCCTGCTGTAGGACACCGTCTTCCTGGATATATGGATTATCAAGGAATGGGCTTGAGATCACAGTTTCCTGTTGAGAGGAAGTGGGCTCTGGGATTACAGTCTCGAGCTCATCCTCGTGAAATTATGACTGAAGTTCTTAAGGCCCTACGGGAGCTTAATGTGGCTTGGAAGAAGATTGGGCACTACAATATGAAATGCAGATGGCTACCTGGAATTCCAGGCCATCATGAAGGCATGATCAACAACCCTGTGCATAGTAATCATTACTTTGGGGATGAGTCTACCATCATTGAAAACGACGGCGTTGTAAAATCACCGAATGTTATTAAGTTTGAAGTACAGCTGTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCCTTCCTTGCCCAGCTTCGAGTCCTCTAA 1548 43.73 MDGPTGRSGGGMDMNVPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPSDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNRMHSGDPTNPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINNPVHSNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL* 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25721564 25726273 + Chy11G205550.1 Chy11g01975 237736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01975 515 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 514 - -
Chy11g01975 515 Pfam UBA/TS-N domain 293 329 IPR015940 -
Chy11g01975 515 SMART serkin_6 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy11g01975 515 SUPERFAMILY Protein kinase-like (PK-like) 17 288 IPR011009 -
Chy11g01975 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Chy11g01975 515 Pfam Kinase associated domain 1 472 514 IPR001772 -
Chy11g01975 515 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 466 514 IPR001772 -
Chy11g01975 515 SMART uba_6 294 331 IPR015940 -
Chy11g01975 515 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy11g01975 515 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Chy11g01975 515 SUPERFAMILY UBA-like 281 330 IPR009060 GO:0005515
Chy11g01975 515 PANTHER SERINE/THREONINE KINASE 8 514 - -
Chy11g01975 515 Gene3D Transferase(Phosphotransferase) domain 1 12 350 - -
Chy11g01975 515 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy11g01975 515 CDD STKc_AMPK_alpha 16 271 - -
Chy11g01975 515 CDD UBA_SnRK1_plant 293 333 - -
Chy11g01975 515 Gene3D Kinase associated domain 1, KA1 395 513 - -
Chy11g01975 515 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Chy11g01975 515 CDD AMPKA_C 389 512 - -
Chy11g01975 515 SUPERFAMILY KA1-like 328 514 IPR028375 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00190 Chy-Chr10:4740849 Chy11g01975 Chy-Chr11:25721564 0 dispersed
Chy11g00802 Chy-Chr11:11554453 Chy11g01975 Chy-Chr11:25721564 1.25E-43 dispersed
Chy11g01975 Chy-Chr11:25721564 Chy05g00039 Chy-Chr5:263124 2.56E-86 dispersed
Chy11g01975 Chy-Chr11:25721564 Chy12g00355 Chy-Chr12:3797110 4.43E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71592 PF00069 Pkinase 1.40E-80 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01975 K07198 - csv:101211720 1015.37