Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01987 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGGCCGGGAACTGCCAGTACCGGCGGGAGTGTCGGTGCCGGCGGAGGAGGTCCATGTGGGGCTTGCAAGTTTTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTTGCTCCTTATTTTGACTCCGAGCAAGGGGCAGCTCATTTCGCAGCTGTACACAAGGTGTTTGGAGCTAGCAACGTCTCCAAGCTCCTCCTTCATATTCCCGTCCACAAACGTCTGGATGCCGTCGTCACTATTTGTTACGAGGCTCAAGCCCGCCTCCGAGACCCCGTATACGGTTGCGTTGCTCATATTTTCGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGACGTACCTTCAAGCCCATCTAGCAACACTGGAGCTCCCGTCGCCGCCGAACCCACCTCCACCACCTCCCCCGCCAAGTTTTCCGGCGCAACCACCGCTTTCCATCTCTGACCTGCCATCGGCTTCCTCCCTGCCGGCCACTTATGACTTGTCATCTCTCTTCGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAACGGCTAGACCACCGCCAGTTCGCCGGCGGAGGTGGTGGTTCATCCACGGCGCCTGGAGAGGGCGATCTCCAAGCCCTTGCACGCGAACTCCTCCTTAGACACGGCGCTCCGCCGTGCTCCGACGCCTCGTCGCCGCAATCGCTCTCCAAATGA 723 58.92 MSANPSTSGGGGPGTASTGGSVGAGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELTYLQAHLATLELPSPPNPPPPPPPPSFPAQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDHRQFAGGGGGSSTAPGEGDLQALARELLLRHGAPPCSDASSPQSLSK* 241
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 25787609 25790111 + Chy11G205670.1 Chy11g01987 237748
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01987 240 MobiDBLite consensus disorder prediction 135 155 - -
Chy11g01987 240 MobiDBLite consensus disorder prediction 187 214 - -
Chy11g01987 240 Pfam Lateral organ boundaries (LOB) domain 29 127 IPR004883 -
Chy11g01987 240 ProSiteProfiles LOB domain profile. 28 130 IPR004883 -
Chy11g01987 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 224 - -
Chy11g01987 240 MobiDBLite consensus disorder prediction 221 240 - -
Chy11g01987 240 MobiDBLite consensus disorder prediction 134 158 - -
Chy11g01987 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 224 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01614 Chy-Chr4:22594907 Chy11g01987 Chy-Chr11:25787609 9.50E-50 dispersed
Chy06g00237 Chy-Chr6:1572197 Chy11g01987 Chy-Chr11:25787609 5.49E-62 dispersed
Chy10g00526 Chy-Chr10:11828124 Chy11g01987 Chy-Chr11:25787609 7.81E-42 dispersed
Chy11g01987 Chy-Chr11:25787609 Chy02g02604 Chy-Chr2:29255861 7.08E-38 dispersed
Chy11g01986 Chy-Chr11:25775513 Chy11g01987 Chy-Chr11:25787609 2.04E-52 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18805 PF03195 LOB 2.70E-38 No_clan Chy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01987 K21994 - csv:101220603 390.193