Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy11g01987 | ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGGCCGGGAACTGCCAGTACCGGCGGGAGTGTCGGTGCCGGCGGAGGAGGTCCATGTGGGGCTTGCAAGTTTTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTTGCTCCTTATTTTGACTCCGAGCAAGGGGCAGCTCATTTCGCAGCTGTACACAAGGTGTTTGGAGCTAGCAACGTCTCCAAGCTCCTCCTTCATATTCCCGTCCACAAACGTCTGGATGCCGTCGTCACTATTTGTTACGAGGCTCAAGCCCGCCTCCGAGACCCCGTATACGGTTGCGTTGCTCATATTTTCGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGACGTACCTTCAAGCCCATCTAGCAACACTGGAGCTCCCGTCGCCGCCGAACCCACCTCCACCACCTCCCCCGCCAAGTTTTCCGGCGCAACCACCGCTTTCCATCTCTGACCTGCCATCGGCTTCCTCCCTGCCGGCCACTTATGACTTGTCATCTCTCTTCGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAACGGCTAGACCACCGCCAGTTCGCCGGCGGAGGTGGTGGTTCATCCACGGCGCCTGGAGAGGGCGATCTCCAAGCCCTTGCACGCGAACTCCTCCTTAGACACGGCGCTCCGCCGTGCTCCGACGCCTCGTCGCCGCAATCGCTCTCCAAATGA | 723 | 58.92 | MSANPSTSGGGGPGTASTGGSVGAGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELTYLQAHLATLELPSPPNPPPPPPPPSFPAQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDHRQFAGGGGGSSTAPGEGDLQALARELLLRHGAPPCSDASSPQSLSK* | 241 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 25787609 | 25790111 | + | Chy11G205670.1 | Chy11g01987 | 237748 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy11g01987 | 240 | MobiDBLite | consensus disorder prediction | 135 | 155 | - | - | |
| Chy11g01987 | 240 | MobiDBLite | consensus disorder prediction | 187 | 214 | - | - | |
| Chy11g01987 | 240 | Pfam | Lateral organ boundaries (LOB) domain | 29 | 127 | IPR004883 | - | |
| Chy11g01987 | 240 | ProSiteProfiles | LOB domain profile. | 28 | 130 | IPR004883 | - | |
| Chy11g01987 | 240 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 18 | 1 | 224 | - | - | |
| Chy11g01987 | 240 | MobiDBLite | consensus disorder prediction | 221 | 240 | - | - | |
| Chy11g01987 | 240 | MobiDBLite | consensus disorder prediction | 134 | 158 | - | - | |
| Chy11g01987 | 240 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 1 | 224 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy04g01614 | Chy-Chr4:22594907 | Chy11g01987 | Chy-Chr11:25787609 | 9.50E-50 | dispersed | |
| Chy06g00237 | Chy-Chr6:1572197 | Chy11g01987 | Chy-Chr11:25787609 | 5.49E-62 | dispersed | |
| Chy10g00526 | Chy-Chr10:11828124 | Chy11g01987 | Chy-Chr11:25787609 | 7.81E-42 | dispersed | |
| Chy11g01987 | Chy-Chr11:25787609 | Chy02g02604 | Chy-Chr2:29255861 | 7.08E-38 | dispersed | |
| Chy11g01986 | Chy-Chr11:25775513 | Chy11g01987 | Chy-Chr11:25787609 | 2.04E-52 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 18805 | PF03195 | LOB | 2.70E-38 | No_clan | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy11g01987 | K21994 | - | csv:101220603 | 390.193 |