Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g01998 | ATGGTGAGAGGAAAGACACAGATGAGGTTAATAGAGAACGCTACAAGCCGTCAAGTCACCTTCTCCAAGAGGAGAAATGGTTTGATGAAAAAAGCTTTTGAGTTATCGGTTCTCTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCCCTAGAGGAAAGCTTTATGAATTTGCTAGCACAAGCATGCAGGCAACTATAGAGCGTTACCGAAAGCGTGCAAAAACCAAAGAAGCCCTGGATCCTCCGTTTGTCAATAATATCGTACAGTTGGAGCATCTTAATCATGAAGAAGCAGCTAGCCTGATAAAGAAAATAGAGCAACTCGAAGTTTCAAAACGGAAAATGTTGGGAGAGGATCTGGGATCTTGCTCCCTTGATGAACTTCAACAACTTGAACATCAGTTGGAGAAAAGTGTTTGCAAAATAAGAGCTAGAAAGATAGAAGTGTTTGAAGAACAGATTAAACAGCTAAAGCAAAAGGAAAAAGTGTTGCAGGATGAAAATGCTAAGTTACTTCAAAAGAATCCTGCAGTCATCAATATAAAGATCAATCATAAGGAATTGGTTCATGGTCATAACTCTTGGTTGTGGTTGGGACAACCTAAGCGCCAAAATTTTCACCTTCTAATTAATATGCCTAGTTGGTTTGATTAG | 654 | 39.3 | MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASTSMQATIERYRKRAKTKEALDPPFVNNIVQLEHLNHEEAASLIKKIEQLEVSKRKMLGEDLGSCSLDELQQLEHQLEKSVCKIRARKIEVFEEQIKQLKQKEKVLQDENAKLLQKNPAVINIKINHKELVHGHNSWLWLGQPKRQNFHLLINMPSWFD* | 218 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 25858106 | 25871623 | + | Chy11G205780.1 | Chy11g01998 | 237759 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g01998 | 217 | Coils | Coil | 140 | 174 | - | - | |
Chy11g01998 | 217 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g01998 | 217 | Gene3D | - | 13 | 82 | IPR036879 | GO:0003677|GO:0046983 | |
Chy11g01998 | 217 | ProSiteProfiles | K-box domain profile. | 91 | 187 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Chy11g01998 | 217 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g01998 | 217 | PANTHER | MADS-BOX PROTEIN SOC1 | 1 | 176 | - | - | |
Chy11g01998 | 217 | PANTHER | MADS BOX PROTEIN | 1 | 176 | - | - | |
Chy11g01998 | 217 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g01998 | 217 | Pfam | K-box region | 95 | 174 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Chy11g01998 | 217 | CDD | MADS_MEF2_like | 3 | 71 | IPR033896 | GO:0000977|GO:0045944 | |
Chy11g01998 | 217 | SUPERFAMILY | SRF-like | 3 | 77 | IPR036879 | GO:0003677|GO:0046983 | |
Chy11g01998 | 217 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g01998 | 217 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g01998 | 217 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Chy11g01998 | 217 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy06g00217 | Chy-Chr6:1413102 | Chy11g01998 | Chy-Chr11:25858106 | 8.43E-27 | dispersed | |
Chy06g00898 | Chy-Chr6:6546436 | Chy11g01998 | Chy-Chr11:25858106 | 7.25E-48 | dispersed | |
Chy09g00944 | Chy-Chr9:12199067 | Chy11g01998 | Chy-Chr11:25858106 | 5.33E-55 | dispersed | |
Chy11g01998 | Chy-Chr11:25858106 | Chy12g01480 | Chy-Chr12:18701175 | 1.15E-42 | dispersed | |
Chy12g01479 | Chy-Chr12:18691801 | Chy11g01998 | Chy-Chr11:25858106 | 8.91E-41 | dispersed | |
Chy11g01998 | Chy-Chr11:25858106 | Chy06g00896 | Chy-Chr6:6529402 | 3.61E-41 | wgd | |
Chy11g01998 | Chy-Chr11:25858106 | Chy09g01173 | Chy-Chr9:13921137 | 8.12E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18806 | PF01486 | K-box | 2.00E-24 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g01998 | - | - | csv:101217704 | 320.472 |