Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g01998 ATGGTGAGAGGAAAGACACAGATGAGGTTAATAGAGAACGCTACAAGCCGTCAAGTCACCTTCTCCAAGAGGAGAAATGGTTTGATGAAAAAAGCTTTTGAGTTATCGGTTCTCTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCCCTAGAGGAAAGCTTTATGAATTTGCTAGCACAAGCATGCAGGCAACTATAGAGCGTTACCGAAAGCGTGCAAAAACCAAAGAAGCCCTGGATCCTCCGTTTGTCAATAATATCGTACAGTTGGAGCATCTTAATCATGAAGAAGCAGCTAGCCTGATAAAGAAAATAGAGCAACTCGAAGTTTCAAAACGGAAAATGTTGGGAGAGGATCTGGGATCTTGCTCCCTTGATGAACTTCAACAACTTGAACATCAGTTGGAGAAAAGTGTTTGCAAAATAAGAGCTAGAAAGATAGAAGTGTTTGAAGAACAGATTAAACAGCTAAAGCAAAAGGAAAAAGTGTTGCAGGATGAAAATGCTAAGTTACTTCAAAAGAATCCTGCAGTCATCAATATAAAGATCAATCATAAGGAATTGGTTCATGGTCATAACTCTTGGTTGTGGTTGGGACAACCTAAGCGCCAAAATTTTCACCTTCTAATTAATATGCCTAGTTGGTTTGATTAG 654 39.3 MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASTSMQATIERYRKRAKTKEALDPPFVNNIVQLEHLNHEEAASLIKKIEQLEVSKRKMLGEDLGSCSLDELQQLEHQLEKSVCKIRARKIEVFEEQIKQLKQKEKVLQDENAKLLQKNPAVINIKINHKELVHGHNSWLWLGQPKRQNFHLLINMPSWFD* 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25858106 25871623 + Chy11G205780.1 Chy11g01998 237759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g01998 217 Coils Coil 140 174 - -
Chy11g01998 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy11g01998 217 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Chy11g01998 217 ProSiteProfiles K-box domain profile. 91 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy11g01998 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Chy11g01998 217 PANTHER MADS-BOX PROTEIN SOC1 1 176 - -
Chy11g01998 217 PANTHER MADS BOX PROTEIN 1 176 - -
Chy11g01998 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Chy11g01998 217 Pfam K-box region 95 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy11g01998 217 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Chy11g01998 217 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Chy11g01998 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy11g01998 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy11g01998 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy11g01998 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00217 Chy-Chr6:1413102 Chy11g01998 Chy-Chr11:25858106 8.43E-27 dispersed
Chy06g00898 Chy-Chr6:6546436 Chy11g01998 Chy-Chr11:25858106 7.25E-48 dispersed
Chy09g00944 Chy-Chr9:12199067 Chy11g01998 Chy-Chr11:25858106 5.33E-55 dispersed
Chy11g01998 Chy-Chr11:25858106 Chy12g01480 Chy-Chr12:18701175 1.15E-42 dispersed
Chy12g01479 Chy-Chr12:18691801 Chy11g01998 Chy-Chr11:25858106 8.91E-41 dispersed
Chy11g01998 Chy-Chr11:25858106 Chy06g00896 Chy-Chr6:6529402 3.61E-41 wgd
Chy11g01998 Chy-Chr11:25858106 Chy09g01173 Chy-Chr9:13921137 8.12E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18806 PF01486 K-box 2.00E-24 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g01998 - - csv:101217704 320.472