Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g02002 ATGGCCGATAATCAGAAGCAAGATCTCGACGACGATGACGACTCTCCACCCACCCATCTCCGTATCAACGACTCCGATTCCTCTCGAATGGACCTTCTTCCTCTTACTCCCAAGCAGGAACATCCTGACTCCAACCTCCCTCATGATCTTCTCACTTTCAAGCCGGATGTCCCTAAAACCCTCTCCTCTCTTCCCCCCAAGAGACCTTCCACCAAGGATCGCCACACCAAGGTCGAGGGCAGAGGTCGGAGAATCCGAATTCCTGCCACCTGTGCCGCCCGTATCTTCCAGTTGACTCGTGAGCTCGGCCACAAGTCCGACGGCGAAACTATCCGCTGGCTTCTCGAGCGGGCCGAGCCCGCCATCATCGCCGCTACCGGTACTGGTACCATTCCCGCCATTGCCATGTCTGTTAACGGCACTCTCAAAATCCCCACCACCACATCGTCTTCTAACCAAGATTCCGCCGACCCTTCCGCCGTTAAGAAACGTCGTAAGCGCCCCGCTAACAGTGACTACGTTGACGTAAATGACGCCCTCTCCGTCTCCATCTCCGCTTCCAACGTCGCCGGTTCCTCCGCCGTCCAACAGGCTTTTCCACCGGGGTTCGTTCCAGTGTGGGCCATCCCTTCGAACGCCATAATTCCCGGGGCTGTTTTCATGGTTCCATCCGTGGCATGCTCTTCCACCCGTCCACAGTTGTTCTCATTCTCTGCTCCGGGGGCACCGCTTATCAACACGACGGCGCGGCCAATTTCCGCCTTCCCGTCGAAGGCAGAGACATCTCACATTCAATCGAGCCCCACCAATCAAAGCTCGAGCACTTCAAGCTCCACCGCTTCCAAATCTCAATCGGTCATGGCACCGATATCGAGCTCGAGCGGAAAAACGACGACGCAGATGCTTAGAGATTTCTCGTTGGAGATATACGACAAGGAAGAGCTTCAATTCATGTCACGCTCGTCGTCAAAACACTGA 978 55.62 MADNQKQDLDDDDDSPPTHLRINDSDSSRMDLLPLTPKQEHPDSNLPHDLLTFKPDVPKTLSSLPPKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAVKKRRKRPANSDYVDVNDALSVSISASNVAGSSAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFSAPGAPLINTTARPISAFPSKAETSHIQSSPTNQSSSTSSSTASKSQSVMAPISSSSGKTTTQMLRDFSLEIYDKEELQFMSRSSSKH* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25904458 25905435 - Chy11G205820.1 Chy11g02002 237763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g02002 325 MobiDBLite consensus disorder prediction 144 172 - -
Chy11g02002 325 PANTHER TRANSCRIPTION FACTOR TCP9 21 323 - -
Chy11g02002 325 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 21 323 IPR005333 GO:0003700
Chy11g02002 325 MobiDBLite consensus disorder prediction 257 299 - -
Chy11g02002 325 ProSiteProfiles TCP domain profile. 71 125 IPR017887 -
Chy11g02002 325 MobiDBLite consensus disorder prediction 1 26 - -
Chy11g02002 325 Pfam TCP family transcription factor 70 162 IPR017887 -
Chy11g02002 325 MobiDBLite consensus disorder prediction 158 172 - -
Chy11g02002 325 MobiDBLite consensus disorder prediction 1 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g02002 - - - csv:101218711 569.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00992 Chy-Chr10:15398882 Chy11g02002 Chy-Chr11:25904458 6.43E-38 dispersed
Chy11g00827 Chy-Chr11:11799892 Chy11g02002 Chy-Chr11:25904458 1.85E-25 dispersed
Chy11g02002 Chy-Chr11:25904458 Chy12g01554 Chy-Chr12:19166908 2.41E-37 dispersed
Chy11g02002 Chy-Chr11:25904458 Chy06g00901 Chy-Chr6:6586978 3.67E-66 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy10g00651 . 34 257 TCP Transcription Factor Family AT5G23280 59.1 8.8e-60 227.3
Chy11g02002 . 65 324 TCP Transcription Factor Family AT2G45680 54.1 3.1e-66 249.2
Chy10g00992 . 70 164 TCP Transcription Factor Family AT3G47620 89.7 8.0e-41 165.2
Chy12g01554 CCT,ECH 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.2e-39 161.4
Chy10g00749 . 47 166 TCP Transcription Factor Family AT3G47620 65.1 2.7e-36 150.2
Chy10g00749 . 47 148 TCP Transcription Factor Family AT1G69690 78.8 2.7e-37 152.9
Chy06g01548 . 42 295 TCP Transcription Factor Family AT3G27010 54.3 2.1e-58 223.0
Chy10g00651 . 4 254 TCP Transcription Factor Family AT5G08330 54.8 2.8e-63 238.8
Chy02g02437 CCT 40 139 TCP Transcription Factor Family AT5G60970 76.2 1.9e-39 160.2
Chy07g00740 . 30 172 TCP Transcription Factor Family AT3G02150 57.0 1.3e-37 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18807 PF03634 TCP 7.00E-30 No_clan Chy TF