Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy11g02002 | ATGGCCGATAATCAGAAGCAAGATCTCGACGACGATGACGACTCTCCACCCACCCATCTCCGTATCAACGACTCCGATTCCTCTCGAATGGACCTTCTTCCTCTTACTCCCAAGCAGGAACATCCTGACTCCAACCTCCCTCATGATCTTCTCACTTTCAAGCCGGATGTCCCTAAAACCCTCTCCTCTCTTCCCCCCAAGAGACCTTCCACCAAGGATCGCCACACCAAGGTCGAGGGCAGAGGTCGGAGAATCCGAATTCCTGCCACCTGTGCCGCCCGTATCTTCCAGTTGACTCGTGAGCTCGGCCACAAGTCCGACGGCGAAACTATCCGCTGGCTTCTCGAGCGGGCCGAGCCCGCCATCATCGCCGCTACCGGTACTGGTACCATTCCCGCCATTGCCATGTCTGTTAACGGCACTCTCAAAATCCCCACCACCACATCGTCTTCTAACCAAGATTCCGCCGACCCTTCCGCCGTTAAGAAACGTCGTAAGCGCCCCGCTAACAGTGACTACGTTGACGTAAATGACGCCCTCTCCGTCTCCATCTCCGCTTCCAACGTCGCCGGTTCCTCCGCCGTCCAACAGGCTTTTCCACCGGGGTTCGTTCCAGTGTGGGCCATCCCTTCGAACGCCATAATTCCCGGGGCTGTTTTCATGGTTCCATCCGTGGCATGCTCTTCCACCCGTCCACAGTTGTTCTCATTCTCTGCTCCGGGGGCACCGCTTATCAACACGACGGCGCGGCCAATTTCCGCCTTCCCGTCGAAGGCAGAGACATCTCACATTCAATCGAGCCCCACCAATCAAAGCTCGAGCACTTCAAGCTCCACCGCTTCCAAATCTCAATCGGTCATGGCACCGATATCGAGCTCGAGCGGAAAAACGACGACGCAGATGCTTAGAGATTTCTCGTTGGAGATATACGACAAGGAAGAGCTTCAATTCATGTCACGCTCGTCGTCAAAACACTGA | 978 | 55.62 | MADNQKQDLDDDDDSPPTHLRINDSDSSRMDLLPLTPKQEHPDSNLPHDLLTFKPDVPKTLSSLPPKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAVKKRRKRPANSDYVDVNDALSVSISASNVAGSSAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFSAPGAPLINTTARPISAFPSKAETSHIQSSPTNQSSSTSSSTASKSQSVMAPISSSSGKTTTQMLRDFSLEIYDKEELQFMSRSSSKH* | 326 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 25904458 | 25905435 | - | Chy11G205820.1 | Chy11g02002 | 237763 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy11g02002 | 325 | MobiDBLite | consensus disorder prediction | 144 | 172 | - | - | |
| Chy11g02002 | 325 | PANTHER | TRANSCRIPTION FACTOR TCP9 | 21 | 323 | - | - | |
| Chy11g02002 | 325 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 21 | 323 | IPR005333 | GO:0003700 | |
| Chy11g02002 | 325 | MobiDBLite | consensus disorder prediction | 257 | 299 | - | - | |
| Chy11g02002 | 325 | ProSiteProfiles | TCP domain profile. | 71 | 125 | IPR017887 | - | |
| Chy11g02002 | 325 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Chy11g02002 | 325 | Pfam | TCP family transcription factor | 70 | 162 | IPR017887 | - | |
| Chy11g02002 | 325 | MobiDBLite | consensus disorder prediction | 158 | 172 | - | - | |
| Chy11g02002 | 325 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy10g00992 | Chy-Chr10:15398882 | Chy11g02002 | Chy-Chr11:25904458 | 6.43E-38 | dispersed | |
| Chy11g00827 | Chy-Chr11:11799892 | Chy11g02002 | Chy-Chr11:25904458 | 1.85E-25 | dispersed | |
| Chy11g02002 | Chy-Chr11:25904458 | Chy12g01554 | Chy-Chr12:19166908 | 2.41E-37 | dispersed | |
| Chy11g02002 | Chy-Chr11:25904458 | Chy06g00901 | Chy-Chr6:6586978 | 3.67E-66 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 18807 | PF03634 | TCP | 7.00E-30 | No_clan | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy11g02002 | - | - | csv:101218711 | 569.696 |