Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g02014 ATGTCCTCCAGCGCAATCGCTCCGCCGCGCCTCATCACTCAATCCCTCACTAAGTCGATGTTCAACTCCCCCGGACTCTCTCTCGCTCTTGTATTCATTTCTTCCCCTCTTTTTCTTCTTCGTTATTCATTTCGTTTATTCTTGTGTGTTGTTGTGGCAATTTCTAATGGCTTTGAAAATCCTCAGACGAACATGGACGGCGGGCCAGGAGATTTAGCTGCCCGACTGCCCGAGGGTTTCGAGCATAATGTTGGAAGGAGAGGCAGAGAGGAAGAACACGAGAGTAGATCTGGGAGTGACAACATGGACGGCGGCTCCGGTGATGACCAGGACGCCGCCGACAACCCTCCCAGGAAAAAGCGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTCTTTAAAGAGTGCCCTCATCCTGATGAGAAGCAACGGCTTGAGTTGAGTCGGAGGCTGTGTTTAGAAACTAGGCAAGTTAAATTTTGGTTCCAAAATCGAAGGACCCAGATGAAGACCCAATTGGAACGCCACGAGAATACTTTGCTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCAATTCGAGATGCTATGAGGAATCCAATCTGTTCAAACTGCGGTGGTCCGGCGATCATTGGCGAAATCTCGCTGGAAGAACAGCAGTTGAGGATTGAAAATGCTCGGTTGAAAGATGAATTGGACCGGGTTTGCGCACTGGCTGGGAAGTTTCTTGGCAGGCCGATTTCATCGCTGGCTAACTCTATTGCACCTCCATTGCCGAGCTCAAGTCTGGAACTGGGAGTTGGGAGTAATGGGTTTGGTAGTTTGACCATGGCGACGTCAATGCCCATCGGGCCTGATTTTGGAGGTGGGTTGTCGGGTAATCTTGCTGTTGTTCAGGCACCTGCAAGGCCAACACCGGGGATGGGACTTGATCGTTCAGTTGAGCGATCTATGCTACTGGAGCTTGCTTTGGCTGCCATGGATGAATTGGTCAAAATGGCGCAGACTGACGAGCCGCTTTGGATTGGGAGTTTGGAAGGTGGAAGAGAAATACTGAACCAGGAGGAGTACATGAGGACATTTACTCCTTGCATTGGCATGAAACCAAACGGTTTTGTCACCGAGGCGTCAAGAGAAAGTGGCATGGTGATCATCAACAGCTTGGCTCTCGTGGAAACATTGATGGATTCGAATCGATGGGCTGAGATGTTTCCGTGTATGATCGCTCGAACCACGACAACTGATGTGATCTCCACTGGCATGGGGGGAACGAGGAACGGTGCACTTCAACTGATGCACGCAGAGCTTCAAGTGCTCTCGCCGTTGGTGCCCGTCCGGGAAGTCAATTTTCTGAGGTTCTGCAAGCAGCATGCTGAAGGGGTGTGGGCAGTCGTCGACGTGTCAGTTGATGGCATGAGAGAGACTCCAACGGGTGGTGGTTCATCATTCGGCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAACGGGTATTCCAAGGTTACGTGGGTGGAACATGCAGAGTACGATGATAGCCAAGTGCACCAGCTCTATCGTCCCCTACTCAGCTCCGGTATGGGCTTTGGAGCACAACGGTGGGTCACCACCCTTCAACGGCAATGTGAATGCCTTGCGATTCTCATGTCATCCGCTGTACCAATCCGAGATCACACTGCCATAACCGCAGGTGGGCGGAGGAGCATGCTGAAGCTAGCCCAACGAATGACAGCCAACTTCTGTGCAGGTGTGTGTGCATCCACAGTGCACAAATGGAACAAGCTGAATGCTGGGAGCGTAGATGAAGATGTTCGCGTCATGACACGGAAGAGTGTGGATGATCCTGGAGAGCCTCCAGGCATTGTGTTGAGCGCTGCTACATCCGTTTGGCTCCCGGTATCGCCCCAACGACTCTTTGATTTCCTTCGTGACGAGCGGCTGAGGAGTGAATGGGACATCCTATCCAACGGCGGCCCCATGCAGGAGATGGCCCATATTGCCAAGGGCCAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTTTACAAGAGACGTGCATAGACGCGGCGGGGTCGCTTGTGGTGTACGCGCCGGTGGACATCCCGGCAATGCACGTCGTGATGAACGGTGGGGATTCGGCTTACGTGGCGCTTCTGCCGTCAGGGTTTGCGATCGTCCCAGACGGGGCGGTGACAGGAGGTCTGACAGCGACAAATGGGAGCAGTCCAAGTGGCGGGGATGGCCCACAGAGTCAGAGAGCGGCAGGCGGCGGGTCCCTCCTCACCGTTGCATTTCAAATCCTCGTGAATAGCCTCCCTACGGCCAAGCTCACCGTAGAGTCGGTTGAAACGGTCAACAATCTCATCTCTTGCACCGTCCAGAAGATCAAGGCCGCTCTTCAATGCGAAACCTGA 2478 52.82 MSSSAIAPPRLITQSLTKSMFNSPGLSLALVFISSPLFLLRYSFRLFLCVVVAISNGFENPQTNMDGGPGDLAARLPEGFEHNVGRRGREEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLAVVQAPARPTPGMGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYMRTFTPCIGMKPNGFVTEASRESGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISTGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDGMRETPTGGGSSFGNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGMGFGAQRWVTTLQRQCECLAILMSSAVPIRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVTGGLTATNGSSPSGGDGPQSQRAAGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET* 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25991815 25996541 + Chy11G205940.1 Chy11g02014 237775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g02014 825 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 64 823 IPR042160 -
Chy11g02014 825 SMART HOX_1 117 180 IPR001356 GO:0003677
Chy11g02014 825 MobiDBLite consensus disorder prediction 757 776 - -
Chy11g02014 825 SMART START_1 327 553 IPR002913 GO:0008289
Chy11g02014 825 MobiDBLite consensus disorder prediction 59 126 - -
Chy11g02014 825 CDD START_ArGLABRA2_like 322 552 - -
Chy11g02014 825 Gene3D - 106 192 - -
Chy11g02014 825 Pfam Homeodomain 119 174 IPR001356 GO:0003677
Chy11g02014 825 SUPERFAMILY Bet v1-like 581 818 - -
Chy11g02014 825 Coils Coil 170 202 - -
Chy11g02014 825 CDD homeodomain 118 176 IPR001356 GO:0003677
Chy11g02014 825 SUPERFAMILY Homeodomain-like 101 176 IPR009057 -
Chy11g02014 825 MobiDBLite consensus disorder prediction 80 99 - -
Chy11g02014 825 ProSiteProfiles START domain profile. 318 556 IPR002913 GO:0008289
Chy11g02014 825 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 64 823 - -
Chy11g02014 825 SUPERFAMILY Bet v1-like 320 553 - -
Chy11g02014 825 Coils Coil 217 237 - -
Chy11g02014 825 ProSitePatterns 'Homeobox' domain signature. 151 174 IPR017970 GO:0000981|GO:0006355
Chy11g02014 825 ProSiteProfiles 'Homeobox' domain profile. 116 176 IPR001356 GO:0003677
Chy11g02014 825 Pfam START domain 327 553 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00419 Chy-Chr1:2952449 Chy11g02014 Chy-Chr11:25991815 0 dispersed
Chy02g00386 Chy-Chr2:2460284 Chy11g02014 Chy-Chr11:25991815 0 dispersed
Chy11g02014 Chy-Chr11:25991815 Chy12g01045 Chy-Chr12:15645774 0 dispersed
Chy01g02083 Chy-Chr1:25557411 Chy11g02014 Chy-Chr11:25991815 0 transposed
Chy04g00119 Chy-Chr4:1065219 Chy11g02014 Chy-Chr11:25991815 0 transposed
Chy04g00924 Chy-Chr4:13249200 Chy11g02014 Chy-Chr11:25991815 0 transposed
Chy06g01010 Chy-Chr6:7677758 Chy11g02014 Chy-Chr11:25991815 0 transposed
Chy12g01582 Chy-Chr12:19332505 Chy11g02014 Chy-Chr11:25991815 0 transposed
Chy11g02014 Chy-Chr11:25991815 Chy06g00925 Chy-Chr6:6797959 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18808 PF01852 START 9.60E-58 CL0209 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g02014 K09338 - csv:101222248 1523.84