Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00013 ATGGCGGCCTTTTCTTCTTCTGCCGACAGCAATACTAGGGCTCCTCCTCCTCCTACCACTAGTACCGACAACAGACTTGCTGCACTTGTTCAATACAATGCTGATGCTGGTCTTTTGAACAAGTTTGAGCTTTCCGATGCTTCTGGTGAGTCTTTTAACTATTCAAGATCAGTTCTTGAAGCTCCTGTCTCTGTTCCTGAAGAACAAATTACTGCCTATTTGTCTAAGATTCAGAGAGGTGGTTTGGTTCAACCATTTGGTTGTTTGCTTGCTATTGAAGAATCTAGTTTTAAGATTATTAGTTTTAGTGAGAATTGTTTTGAATTACTGGGCCTTAATGATGATCAATTTGGGTCGGCACAGGGGAAGAAGGGTCTGATTGGGGTTGATATGAGAGCTCTATTTACGCCTTCCTCTGGGGCTTCTTTGGCCAAAGCGGCTTCTTCCAGGGAGATTTCGCTGTTGAACCCTGTTTGGGTTTATTCTAGGACTACCCAGAAGCCGTTTTATGCTATATTGCATAGAATTGATGTGGGGATTGTCATTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCATTGTCGCTTGCTGGTGCTGTACAGTCACAAAAACTCGCGGTTAGAGCGATTTCCAGGTTGCAGGCTCTACCTAGTGGTGATATCGGTATTCTATGTGATACGGTTGTCGAAGATATTCAAAAACTTACCGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGACGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCTGACTTAGAGCCATACCTTGGTTTGCATTATCCTGCCATTGATATACCTCAAGCAGCTCGTTTTTTGTTCAAGCAGAACCGCATTAGGATGATTTGTGATTGCAATGCGAAGCCGGTGCCGGTCATTCAAAGTGATGATCTAAAGCAGCCTCTTTGTTTGGTAAATTCAACACTAAGATCACCACATAGCTGTCATTTGCAATACATGGCAAATATGAGTACCTTATCTTCATTAGCAATGGCAATAGTCATGAACAGTGATGACTCACCAACAAGGCTATGGGGTCTGGTAGTGTGTCACCATACTTCTCCTCGATATGTCCCTTTCCCACTTCGTTATGCCTGCGAGTTTCTCATGCAGGCGTTCGGGCTGCAGCTTTACATGGAACTTCAATTGGCATCACAATTAATAGAGAAAAAGATCCTCAAGACACAAACTTTACTTTGTGACATGCTTCTCCGAGGCTCTCCATGTGCATTGCTGACTCGGTCTCCTAGTATAATGGATCTCGTGAAGTGTGATGGTGCTGCATTGTACTATAAGGGGGCATGCTATTTATTAGGTATAACTCCAACTGAAGCACAAGTAAAAGATCTTGCAGAGTGGATACTCAATAATCATGGGGATTCTACAGGGCTGAGCACGGATAGTTTGGCTGATGCTGGCTATCCTGAAGCTGCTTCACTAGGTGATGCAGTGTGCGGTATGGCAACTGCAAGAATCACTTCAAAGGATTTCTTATTCTGGTTCAGATCCCATGTTGCAAAGGAAATTCAATGGGGAGGAGCCAAGCATCATCCAGACGATAAGGACGATAGTGGAAGAATGCATCCGAGATCATCATTTAAAGCATTTCTTGAAGTTGCCAAGAGTAAAAGTTTGTCTTGGGAAGTTCAAGAAATAAATGCCATTCACTCATTGCAGCTAATAATGAGGGAGTCTTTTCCAAACACAGGGGACAGTAATTCAAAGGCAGAAAATTCTCCCCAGTTGAGTGATGCTGAGATGCAGGATATCAATGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGGTTGATTGAAACAGCAACGGTTCCAATATTTGGGGTTGACTCAACTGGTTTGATCAATGGATGGAATGCTAAAATTTCTGAACTTGTGGGATTACATACTGGAGAAGCTCTGGGGAAATCTCTGGTTAATGAGATTGTTCATGAAGATTCACGTGGAACTGCCGAAGATTTACTTTCCTGTGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTAAAACTGAGAAGTTTTCGAACTGATAAAGAACACCCTAACGTGTATATTGTAGTTAACGCTTGCACAAGTAGAGATTACACAAACAAAGTTGTTGGAATTTGCTTTGTTGGGCAAGATCTTACATCCGAGAAAGGTGTGATGGATAAATTTATCCGTCTGCAGGGAGATTATAAGACTATTATTGAAAGTCTGAGCCCATTGATTCCTCCAATGTTTGTTTCAGATGAGAATGGTTACTGTTGTGAATGGACTGCAGCCATGGAAAAGCTTACTGGTTGGAGGAAAAATGAAGTTGTAGGAAAAATGCTAGCTGGGGAGATCTTTGGGAATTTCTGTAGATTGAAAGGTCTAGATACCCTCACTAGGTTCATGATTCTATTATATCAAGGCATTAGTGGTCAAGTAACCGAAAAGTTTCCATTAGGATTTTTCAATAAGGATGGGAATTATGTAGATGTGCTGTTAACATCGAACAAGAGAACTGATGCCGAAGGAAATGCCATTGGTTGTATCTGCTTCCTGCAAATTGTTCAGCCCAACTTACATGGGGTCTTGGAAGGACTTGGGACGGGTGATAGGGAGGCCATTCTGCAGCATAAGGAGTTGAGCTTCTTAAAGCATGAGGTGAAAAATCCTTTAAATGGCCTCAGATTTATGCATGAACTCCTTGTAAACTCTGGCATTACCGAAAACCAGAAACTTTTCCTTGATACTAGTGATGCATGCGAGAGACAAATCATGACAATCATAGAGGATATGGACTTCAGAAGTTTAGAAGGGGGCCAAGTAGAGATCAACAGACAAGACTTTCTCCTTGGGAGTGTTCTGGATGCCATTATCTGTCAAATCATGATTGTTGTCAAAGAGAGGAACATTCAACTTTTTCATGAAATTCCAGAAGAAATCAAAACGTTAACTCTTTGCGGCGACCAAATTAAGCTTCAGATGGTTTTATCAGATTTCTTACTTAACATAGTGCAGTATGCGCCTGTTCTGGATGGTTGGGTTGAAATCAAAATTTCTTCTGGTTTGAAGCTTATACAAGATGGAAATGAGCACATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGTTTGCCTCATGAACTAATCCAAGATATGGTTGGAGGAGGACAACAGTGGACTTCAGAACAAGGCCTGGCCCTAAACCTGTCACGCAGACTTCTTAATAAATTGAACGGTAATGTCCGCTATGTTAGAGAGCAAACCAAATGCTACTTCCTCATCGACCTCGAACTCAAGTTAAGGCGCTCGAGGGGGTCAACAGAAGCTACTACGAGCCAAAGGACTTGA 3369 42.12 MAAFSSSADSNTRAPPPPTTSTDNRLAALVQYNADAGLLNKFELSDASGESFNYSRSVLEAPVSVPEEQITAYLSKIQRGGLVQPFGCLLAIEESSFKIISFSENCFELLGLNDDQFGSAQGKKGLIGVDMRALFTPSSGASLAKAASSREISLLNPVWVYSRTTQKPFYAILHRIDVGIVIDLEPARSVDPALSLAGAVQSQKLAVRAISRLQALPSGDIGILCDTVVEDIQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRIRMICDCNAKPVPVIQSDDLKQPLCLVNSTLRSPHSCHLQYMANMSTLSSLAMAIVMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLASQLIEKKILKTQTLLCDMLLRGSPCALLTRSPSIMDLVKCDGAALYYKGACYLLGITPTEAQVKDLAEWILNNHGDSTGLSTDSLADAGYPEAASLGDAVCGMATARITSKDFLFWFRSHVAKEIQWGGAKHHPDDKDDSGRMHPRSSFKAFLEVAKSKSLSWEVQEINAIHSLQLIMRESFPNTGDSNSKAENSPQLSDAEMQDINELSSVACEMVRLIETATVPIFGVDSTGLINGWNAKISELVGLHTGEALGKSLVNEIVHEDSRGTAEDLLSCALQGKEDKNVELKLRSFRTDKEHPNVYIVVNACTSRDYTNKVVGICFVGQDLTSEKGVMDKFIRLQGDYKTIIESLSPLIPPMFVSDENGYCCEWTAAMEKLTGWRKNEVVGKMLAGEIFGNFCRLKGLDTLTRFMILLYQGISGQVTEKFPLGFFNKDGNYVDVLLTSNKRTDAEGNAIGCICFLQIVQPNLHGVLEGLGTGDREAILQHKELSFLKHEVKNPLNGLRFMHELLVNSGITENQKLFLDTSDACERQIMTIIEDMDFRSLEGGQVEINRQDFLLGSVLDAIICQIMIVVKERNIQLFHEIPEEIKTLTLCGDQIKLQMVLSDFLLNIVQYAPVLDGWVEIKISSGLKLIQDGNEHIHLQIRMSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRSRGSTEATTSQRT* 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 176102 187033 + Chy12G206130.1 Chy12g00013 237794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00013 1122 Gene3D - 923 1099 IPR036890 -
Chy12g00013 1122 PRINTS Phytochrome signature 135 157 IPR001294 GO:0006355|GO:0009584
Chy12g00013 1122 PRINTS Phytochrome signature 702 719 IPR001294 GO:0006355|GO:0009584
Chy12g00013 1122 PRINTS Phytochrome signature 628 643 IPR001294 GO:0006355|GO:0009584
Chy12g00013 1122 PRINTS Phytochrome signature 235 254 IPR001294 GO:0006355|GO:0009584
Chy12g00013 1122 PRINTS Phytochrome signature 421 441 IPR001294 GO:0006355|GO:0009584
Chy12g00013 1122 PRINTS Phytochrome signature 722 742 IPR001294 GO:0006355|GO:0009584
Chy12g00013 1122 PRINTS Phytochrome signature 609 625 IPR001294 GO:0006355|GO:0009584
Chy12g00013 1122 PRINTS Phytochrome signature 320 341 IPR001294 GO:0006355|GO:0009584
Chy12g00013 1122 PRINTS Phytochrome signature 506 525 IPR001294 GO:0006355|GO:0009584
Chy12g00013 1122 PRINTS Phytochrome signature 539 557 IPR001294 GO:0006355|GO:0009584
Chy12g00013 1122 Gene3D PAS domain 754 864 - -
Chy12g00013 1122 PANTHER PHYTOCHROME E 26 1111 - -
Chy12g00013 1122 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 946 1103 IPR036890 -
Chy12g00013 1122 MobiDBLite consensus disorder prediction 1 23 - -
Chy12g00013 1122 Gene3D - 201 552 IPR029016 -
Chy12g00013 1122 Gene3D PAS domain 76 323 - -
Chy12g00013 1122 SMART HisKA_10 881 945 IPR003661 GO:0000155|GO:0007165
Chy12g00013 1122 CDD PAS 617 724 IPR000014 -
Chy12g00013 1122 ProSiteProfiles Histidine kinase domain profile. 888 1107 IPR005467 -
Chy12g00013 1122 CDD HisKA 886 941 IPR003661 GO:0000155|GO:0007165
Chy12g00013 1122 Pfam PAS fold 72 187 IPR013654 GO:0006355
Chy12g00013 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 754 856 IPR035965 -
Chy12g00013 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 612 720 IPR035965 -
Chy12g00013 1122 SUPERFAMILY GAF domain-like 399 576 - -
Chy12g00013 1122 Pfam Phytochrome region 404 576 IPR013515 GO:0006355|GO:0009584
Chy12g00013 1122 TIGRFAM sensory_box: PAS domain S-box protein 613 728 IPR000014 -
Chy12g00013 1122 Pfam GAF domain 222 391 IPR003018 GO:0005515
Chy12g00013 1122 Gene3D - 396 569 IPR043150 -
Chy12g00013 1122 Pfam PAS fold 609 723 IPR013767 GO:0006355
Chy12g00013 1122 Pfam PAS fold 740 859 IPR013767 GO:0006355
Chy12g00013 1122 PANTHER TWO-COMPONENT HISTIDINE KINASE 26 1111 - -
Chy12g00013 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 77 188 IPR035965 -
Chy12g00013 1122 SUPERFAMILY GAF domain-like 200 387 - -
Chy12g00013 1122 ProSiteProfiles PAS repeat profile. 740 792 IPR000014 -
Chy12g00013 1122 Gene3D PAS domain 607 738 - -
Chy12g00013 1122 ProSitePatterns Phytochrome chromophore attachment site signature. 320 329 IPR013516 -
Chy12g00013 1122 SMART gaf_1 220 401 IPR003018 GO:0005515
Chy12g00013 1122 PIRSF Phytochrome_conventional 5 1115 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Chy12g00013 1122 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 220 381 IPR016132 -
Chy12g00013 1122 CDD HATPase_Phy-like 993 1105 IPR044767 -
Chy12g00013 1122 Pfam His Kinase A (phospho-acceptor) domain 886 945 IPR003661 GO:0000155|GO:0007165
Chy12g00013 1122 CDD PAS 751 859 IPR000014 -
Chy12g00013 1122 SMART pas_2 739 809 IPR000014 -
Chy12g00013 1122 SMART pas_2 608 675 IPR000014 -
Chy12g00013 1122 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 993 1103 IPR003594 -
Chy12g00013 1122 ProSiteProfiles PAS repeat profile. 606 677 IPR000014 -
Chy12g00013 1122 SMART HKATPase_4 993 1105 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00756 Chy-Chr6:5211189 Chy12g00013 Chy-Chr12:176102 0 dispersed
Chy12g00013 Chy-Chr12:176102 Chy10g00085 Chy-Chr10:2159657 1.73E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00013 K12123 - csv:101214900 2203.71