Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00020 ATGGTAGTTGAAGATACGATCAAAGCTACATCGGCGGAAGATCTTTCTAATTCCATTGCTAATCAAAACCCTAGAGGACGTAGCGGTGAGGAAGATGAGGAACTTGAGGAAGGTGAGATCGTCGGCGACGACGACCTTGACTCCTCCAATTTGTCCGCGGCCTTAGTTCATCAGCCTCACCCTCTTGAGCACTCTTGGACCTTTTGGTTTGATAACCCATCTGCCAAATCCAAGCAAGCCACCTGGGGTGCGTCTATGCGACCGATCTATACCTTCTCCACTGTCGAGGAGTTCTGGAGTGTTTACAACAATATTCATCATCCAAGCAAATTGGCGTTGAGGGCAGATTTGTACTGCTTCAAACATAAAATTGAACCTAAATGGGAAGATCCTGTTTGTGCGAATGGAGGGAAATGGACTGTGAACTTTTCAAGGGGAAAATCTGATAATGGCTGGTTGTACACGCTGCTTGCTATGATCGGAGAACAGTTTGACTGTGGTGATGAAATTTGTGGAGCAGTTGTTAATGTTAGATCTGGGCAGGATAAAATATCGATTTGGACAAAGAATGCTTCCAATGAAGCTGCGCAGGCGAGCATTGGAAAACAGTGGAAGGAGTTTCTTGATTACAATGAAAGCATTGGCTTTATATTCCACGATGACGCAAAGAAATTTGATAGACATGCGAAGAATAAATATATGTGTGTGGCGTGGGAGGAGGATAACTTGTCCTATTCGTGCAAAGCATGCTCTGCTGCATCTCGGCATGAATTTGTGGAGATCGCCATTGCGCATAACACAAAAGCACCTGAATCTCAGATTTTTGTTCTGTACTTGTCAATTTTAGCCAGTGAGGTGAAATGGATGCTCTTCTATAATCAACTTCTATTAGCCTAG 897 43.92 MVVEDTIKATSAEDLSNSIANQNPRGRSGEEDEELEEGEIVGDDDLDSSNLSAALVHQPHPLEHSWTFWFDNPSAKSKQATWGASMRPIYTFSTVEEFWSVYNNIHHPSKLALRADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMIGEQFDCGDEICGAVVNVRSGQDKISIWTKNASNEAAQASIGKQWKEFLDYNESIGFIFHDDAKKFDRHAKNKYMCVAWEEDNLSYSCKACSAASRHEFVEIAIAHNTKAPESQIFVLYLSILASEVKWMLFYNQLLLA* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 245413 248595 + Chy12G206200.1 Chy12g00020 237801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00020 298 MobiDBLite consensus disorder prediction 10 25 - -
Chy12g00020 298 SUPERFAMILY eIF4e-like 56 231 IPR023398 -
Chy12g00020 298 MobiDBLite consensus disorder prediction 1 37 - -
Chy12g00020 298 ProSitePatterns Eukaryotic initiation factor 4E signature. 116 139 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Chy12g00020 298 Pfam Eukaryotic initiation factor 4E 61 213 IPR001040 GO:0003723|GO:0003743|GO:0006413
Chy12g00020 298 Coils Coil 293 298 - -
Chy12g00020 298 Gene3D RNA Cap, Translation Initiation Factor Eif4e 52 235 IPR023398 -
Chy12g00020 298 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 4 234 IPR001040 GO:0003723|GO:0003743|GO:0006413
Chy12g00020 298 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-1 4 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01388 Chy-Chr4:20485942 Chy12g00020 Chy-Chr12:245413 9.66E-33 dispersed
Chy05g00296 Chy-Chr5:2885260 Chy12g00020 Chy-Chr12:245413 9.28E-72 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00020 K03259 - csv:101206312 466.463