Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00042 ATGCTGTCAAACAATCATAACAACAGTCCTCCTACTCCTAGAACCAGATTAGAGAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACAGATCTTCTTCTCTCAATGAAGAAGCACGAGATGCTTACAGTCTGGGAGAAGTCAATAGTTACGATCTCTTCACCAATGCTGGTGATAGTTGTGGGTCTTTTAATGAGGAAGATGTCTTAGAAGGGATATCGGTGGTAAAAGATATCTTTGATGGATTCCAAAGGCAGGAAGGGAGGACTTATAAGCAACGTCTTCTTGTTGTAGCAAACAGGTTGCCTGTGTCTGCTGTTAGAAGAGGGAAGGAGACATGGCATCTCGAAATTAGCGTTGGTGGTTTAGTCAGTGCACTTTTAGGATTAAAGGAGTTCGAGGCAAGATGGATTGGTTGGGCTGGTGTGAATGTACCTGATGAAGCAGGACAGAGAGCCCTAGAGAAAGCATTAGCTGAAAAGAAATGCATACCGGTCTTTCTTGATGAGGAGATTGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTATTTCATTACCTTGGTCTCCCCCAAGAAGATCGTCTTGCAACAACACGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCACGATTATCACTTGATGTTTCTCCCAAAATGTCTTAAAGAGCACAATAATACGATGAAAGTTGGTTGGTTCCTTCACACCCCATTTCCATCCTCAGAAATACATAGAACTCTACCATCTCGTTCAGAGCTGCTGAGATCTGTTCTTGCAGCTGATTTAGTTGGTTTCCACACATATGATTATGCCAGGCATTTTGTTAGCGCCTGCACCCGTATTCTTGGATTGGAGGGCACACCTGAAGGAGTAGAGGATCAAGGAAAACTCACTCGCATAGCTGCTTTTCCCATTGGAATAGATTCTGAACGATTCATACGAGCTCTGAAACTCCCTCAAGTCCAGGATCACATTAAAGAACTACAAGAAAGATTTGCAGGAAGAAAGGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTTTGGCATTTGAAAAATTTCTTGAAGAAAATCCAAAGTGGCGTGATAAAGTAGTTTTGCTGCAAATTGCAGTGCCAACAAGGACAGATGTTCCCGAGTATCAAAAGCTAACGAGTCAGGTTCATGAGATCGTCGGGCGAATTAATGGGAGATTTGGCACTCTTAGTGCAGTTCCAATACATCATCTAGATCGTTCACTCGACTTCCATGCATTATGTGCTCTATATGCTGTCACCGATGTGGCACTAGTTACATCTTTGAGAGACGGAATGAATCTTGTGAGCTATGAGTTTGTTGCCTGCCAAGCTTCCAAGAAAGGTGTTCTTATTCTAAGTGAGTTTGCAGGTGCAGCACAGTCATTAGGTGCCGGAGCTATTTTAGTTAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGCCAGCTGATGAAAGAGAAAGACGACACCATCATAATTTTATGCATGTTACAACTCATACATCCCAAGAATGGGCTGCAACATTTGTGAGTGAACTCAACGACACCATAGTTGAAGCTCAGATCAGAACCAGACAGATACCACCTTTACTTCCAATTAGAGAAGCAGTGAACTGTTATTCTCGATCACATAATCGATTGGTTATTTTGGGTTTCAATGCTACCTTAACAGAAGCACTTGATGCCCTTGGAAGAAGATATGGCCAAATAAGAGACATGGATCTTAGATTACATCCAGATGTGAAAGAGCCCTTGAAGAAGCTTTGCGATGACCAGAATACTACAGTGGTTGTCCTCAGTGGGAGTGACAGAAGTGTCCTAGATGATAATTTCGGCAACTACAACATGTGGTTGGCAGCAGAAAACGGGATGTTCTTACGTCCTACAAAGGGTGAATGGATGACGACAATGCCTGAAAATTTACATATGGATTGGGTTGAGAGTGTTAAGCATGTGTTTGAGTATTTTACTGAAAGAACTCCGAGATCCCATTTCGAGCTTCGTGAAACTTCACTGGTGTGGAACTACAAATATGCAGATGTTGAGTTTGGAAGACTTCAAGCGAGGGACTTGTTGCAGCATCTATGGACTGGTCCAATCTCAAATGCATCAGTTGATGTTGTCCAAGGCAGTCGCTCAGTCGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGACAAAGGCATAAACAAGCCTATTGACTATGTTCTCTGTGTTGGACACTTCCTAACCAAGGATGAAGATGTCTATACATTTTTCGAACCCGACCTTCCTATCGAAGTGCCAGCTGCAGCAGCAAGAACAACAGTCTCCAATCCTTTTGGAGGAGTACCAGTGCCAAAGATCTCAAACAATGGAGTCTCACCAAGCAGGTCAGCACGTCTCAAGAAACAACGCTCCCTTACCATTTTAGAAAAAAGAGCAAATACCCATGGGAGTGCAGTGTTTTGGAGGCCTGTGGTTCAGGATCGATTGTCGCTGCACGAGGGTTCGTCTGTTCTCGATCTCAAGGGCGATGATTACTTCTCCTGTGCTGTGGGACGGAAAAGATCCAACGCAAGATATCTTCTTGGATCATCAGATGATGTTGTCACACTTGTGAAGGAGTTGTCAGAATGTTCAGAGTGTCACATTTGA 2805 42.82 MLSNNHNNSPPTPRTRLERLLRERELRRSNRSSSLNEEARDAYSLGEVNSYDLFTNAGDSCGSFNEEDVLEGISVVKDIFDGFQRQEGRTYKQRLLVVANRLPVSAVRRGKETWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEAGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNNTMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSERFIRALKLPQVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLSAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALNMPADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPLLPIREAVNCYSRSHNRLVILGFNATLTEALDALGRRYGQIRDMDLRLHPDVKEPLKKLCDDQNTTVVVLSGSDRSVLDDNFGNYNMWLAAENGMFLRPTKGEWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPDLPIEVPAAAARTTVSNPFGGVPVPKISNNGVSPSRSARLKKQRSLTILEKRANTHGSAVFWRPVVQDRLSLHEGSSVLDLKGDDYFSCAVGRKRSNARYLLGSSDDVVTLVKELSECSECHI* 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 356437 363239 - Chy12G206420.1 Chy12g00042 237823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00042 934 Pfam Glycosyltransferase family 20 94 559 IPR001830 GO:0003824|GO:0005992
Chy12g00042 934 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 94 559 IPR012766 GO:0003825|GO:0005992
Chy12g00042 934 Gene3D - 684 764 - -
Chy12g00042 934 CDD HAD_TPP 592 823 - -
Chy12g00042 934 Gene3D Glycogen Phosphorylase B; 341 543 - -
Chy12g00042 934 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 48 926 IPR001830 GO:0003824|GO:0005992
Chy12g00042 934 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 93 562 - -
Chy12g00042 934 CDD GT20_TPS 94 559 IPR001830 GO:0003824|GO:0005992
Chy12g00042 934 Pfam Trehalose-phosphatase 617 817 IPR003337 GO:0003824|GO:0005992
Chy12g00042 934 Gene3D Glycogen Phosphorylase B; 86 340 - -
Chy12g00042 934 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 48 926 - -
Chy12g00042 934 Gene3D - 618 820 IPR023214 -
Chy12g00042 934 SUPERFAMILY HAD-like 617 920 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02157 Chy-Chr6:25872096 Chy12g00042 Chy-Chr12:356437 3.07E-145 dispersed
Chy07g00463 Chy-Chr7:3700312 Chy12g00042 Chy-Chr12:356437 0 dispersed
Chy12g00042 Chy-Chr12:356437 Chy06g00820 Chy-Chr6:5757131 2.12E-07 dispersed
Chy12g00042 Chy-Chr12:356437 Chy10g00918 Chy-Chr10:14841488 1.47E-140 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00042 K16055 - csv:101213690 1812.73