Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00045 ATGAGTTGTTATGAGGAAGAAGATGAAGAATCAGGAGTAGTAGGATTAAGAAGATCATCATCATCAAGAACAGGAAGAGGAAAGATTGAAATAAAGAGAATTGAAAATACAACAAATCGTCAAGTTACTTTCTGTAAACGAAGAAATGGTTTGCTTAAGAAAGCTTATGAGCTCTCTGTCCTTTGTGATGCTGAGGTTGCTCTTATCGTCTTCTCCTCCCGTGGTCGTCTCTATGAATACGCAAACAACAGTGTTGGGGCTACGATTTCGAGGTACAAAAAGGCATATTCGGATCCCTCCACCGCCATGACCGTTTCAGAAGCCAATACTCAGTTCTACCAGCAAGAATCTGCCAAATTACGAGCTCAAATCGGAAATTTGCAAAACCTAAACAGGCATTTGTTGGGGGAATCCATCAGTTCGTTATCAGTTAAAGATTTGAAAAGCCTAGAGGTGAAATTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTTCGGAGATTGAATACATGCAAAAAAGGGTATAA 543 39.78 MSCYEEEDEESGVVGLRRSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKRV* 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 397024 399132 - Chy12G206450.1 Chy12g00045 237826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00045 180 PANTHER SERUM RESPONSE FACTOR HOMOLOG 25 179 - -
Chy12g00045 180 CDD MADS_MEF2_like 28 94 IPR033896 GO:0000977|GO:0045944
Chy12g00045 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 33 80 IPR002100 GO:0003677|GO:0046983
Chy12g00045 180 ProSitePatterns MADS-box domain signature. 26 80 IPR002100 GO:0003677|GO:0046983
Chy12g00045 180 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 25 179 - -
Chy12g00045 180 Pfam K-box region 107 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy12g00045 180 ProSiteProfiles K-box domain profile. 110 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy12g00045 180 Gene3D - 36 107 IPR036879 GO:0003677|GO:0046983
Chy12g00045 180 PRINTS MADS domain signature 26 46 IPR002100 GO:0003677|GO:0046983
Chy12g00045 180 PRINTS MADS domain signature 61 82 IPR002100 GO:0003677|GO:0046983
Chy12g00045 180 PRINTS MADS domain signature 46 61 IPR002100 GO:0003677|GO:0046983
Chy12g00045 180 MobiDBLite consensus disorder prediction 1 21 - -
Chy12g00045 180 SUPERFAMILY SRF-like 25 99 IPR036879 GO:0003677|GO:0046983
Chy12g00045 180 ProSiteProfiles MADS-box domain profile. 24 84 IPR002100 GO:0003677|GO:0046983
Chy12g00045 180 SMART madsneu2 24 83 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00197 Chy12g00045 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g00996 Chy-Chr11:14088961 Chy12g00045 Chy-Chr12:397024 3.49E-81 dispersed
Chy12g00045 Chy-Chr12:397024 Chy11g01793 Chy-Chr11:24294112 3.44E-46 dispersed
Chy12g00045 Chy-Chr12:397024 Chy02g00197 Chy-Chr2:1342093 3.20E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18809 PF01486 K-box 3.70E-23 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00045 K09264 - csv:101205366 324.324