Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00047 ATGGAGACGAATAACAATAACAACAACGGGGTGAGGTTTTTGTTAGGGAAGCAATCGTCGATGGCGCCGGATCGCCAGCCGGAGGAGGCGGAGTTGGCGGAAGACGGTGAGGAGATCGATCCAGGGGTGAGATTGATGTATTTGGCGAATGAAGGCGATTTGGAAGGGATTAAGGAGCTTTTAGATTCAGGAATTGATGTTAATTTTCAAGATGTTGATAATCGGACGGCGCTTCATATTGCTGCTTGTCAAGGCTGCTACGAGATCGTCGATTTACTGCTCCGCCGTGGCGCTGAAATTGACCCCAAAGATCGCTGGGGTAGTACGCCTCTTGCAGATGCTATATTCTACAAAAACCATGAAGTTATCAAATTGCTGGAAAAACGTGGCGCAAAACATCTGATGGCTCCCATGCATGTCAAACATGCTCGTCAAGTCCCAGAATATGAAATTGATCCTAAAGAATTTGACTTCACAAACAGTGTCAACTTGACCAAGGGAACCTTCCATCTTGCATCATGGCGCGGAATCCAAGTTGCAGTCAAAGAGCTTCCTGAGGATGTGATTTCAGAGGAGGATAAAGTGAACGCCTTCAGAGATGAGCTTGCATTGCTTCAGAAGATTCGGCATCCTAACGTGGTTCAATTTCTTGGTGCCGTCACTCAAAGTAGTCCCATGATGATTGTCACTGAATATTTGCCTAAGGGAGATCTTTGTCAACTTTTACAGAAAAAAGGACCACTAAAACCAATTGTAGCTGTGAAATTTGCCCTTGATATTGCTAGGGGAATGAACTATTTGCACGAAAATAAACCTGCACCGATCATCCACCGTGATCTTGAGCCATCAAATATATTGCGAGATGACACTGGGAACCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTCACAGTCAAGGAGGATAAACCTTTAACATGTCAAGACACTGCTTGCCGATACGTCGCTCCAGAAGTTTTCAAAAATAATGGATACGACACCAAAGTAGACGTTTTCTCCTTTTCTTTAATTCTACAAGAGATGATCGAAGGACAACCACCATTTTCAAACAAAAAAGAAAATGCCATTTGTAAAGGGTATGCAGCAGGAATGCGCCCTCCTTTCAAAGCTCCAGCTAAATGCTACGCCCATGGAATTAAAGAGTTGATTGAAGCTTGCTGGGATGAGAGGCCATCAAAGAGACCAACTTTTAGACAGATAATTACAAGGTTGGAAACAATTCATCACAGTCTTAGCCATAGAAGACGTTGGAAGCTCCCAACGTTGAGATGTTTTCAGGATCCTGATGCCAAGATAAGAAGAGACCATCTCTCCAGTAGCCGAAGCCTTTCATCGCGATCTGCAAGCAGCATATGA 1377 44.08 METNNNNNNGVRFLLGKQSSMAPDRQPEEAELAEDGEEIDPGVRLMYLANEGDLEGIKELLDSGIDVNFQDVDNRTALHIAACQGCYEIVDLLLRRGAEIDPKDRWGSTPLADAIFYKNHEVIKLLEKRGAKHLMAPMHVKHARQVPEYEIDPKEFDFTNSVNLTKGTFHLASWRGIQVAVKELPEDVISEEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQLLQKKGPLKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKEDKPLTCQDTACRYVAPEVFKNNGYDTKVDVFSFSLILQEMIEGQPPFSNKKENAICKGYAAGMRPPFKAPAKCYAHGIKELIEACWDERPSKRPTFRQIITRLETIHHSLSHRRRWKLPTLRCFQDPDAKIRRDHLSSSRSLSSRSASSI* 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 415459 419370 - Chy12G206470.1 Chy12g00047 237828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00047 458 SUPERFAMILY Protein kinase-like (PK-like) 166 414 IPR011009 -
Chy12g00047 458 CDD STKc_MAP3K-like 167 411 - -
Chy12g00047 458 PIRSF ILK 1 433 - -
Chy12g00047 458 SUPERFAMILY Ankyrin repeat 44 133 IPR036770 -
Chy12g00047 458 Pfam Protein tyrosine and serine/threonine kinase 167 411 IPR001245 GO:0004672|GO:0006468
Chy12g00047 458 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Chy12g00047 458 MobiDBLite consensus disorder prediction 1 15 - -
Chy12g00047 458 Gene3D - 12 148 IPR036770 -
Chy12g00047 458 Pfam Ankyrin repeats (3 copies) 45 132 IPR002110 GO:0005515
Chy12g00047 458 Gene3D Phosphorylase Kinase; domain 1 157 233 - -
Chy12g00047 458 SMART ANK_2a 106 135 IPR002110 GO:0005515
Chy12g00047 458 SMART ANK_2a 73 102 IPR002110 GO:0005515
Chy12g00047 458 SMART ANK_2a 40 69 IPR002110 GO:0005515
Chy12g00047 458 MobiDBLite consensus disorder prediction 1 36 - -
Chy12g00047 458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 13 441 - -
Chy12g00047 458 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 13 441 - -
Chy12g00047 458 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515
Chy12g00047 458 ProSiteProfiles Protein kinase domain profile. 123 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00047 458 Gene3D Transferase(Phosphotransferase) domain 1 234 442 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00198 Chy12g00047 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g01031 Chy-Chr10:15602821 Chy12g00047 Chy-Chr12:415459 1.26E-90 dispersed
Chy11g00991 Chy-Chr11:13942694 Chy12g00047 Chy-Chr12:415459 0 dispersed
Chy12g00047 Chy-Chr12:415459 Chy04g00388 Chy-Chr4:3429929 5.24E-46 dispersed
Chy09g00524 Chy-Chr9:5434026 Chy12g00047 Chy-Chr12:415459 3.54E-13 transposed
Chy01g00307 Chy-Chr1:2195586 Chy12g00047 Chy-Chr12:415459 6.92E-138 wgd
Chy12g00047 Chy-Chr12:415459 Chy02g00198 Chy-Chr2:1354518 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71595 PF07714 PK_Tyr_Ser-Thr 2.10E-55 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00047 - - csv:101205123 884.404