Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00049 ATGCCGACGACTATTGCGACTGAGCGCCGACCAGCCAAACACACTGCCACCAATTCTTGTGGCGTAGGATCGAAGTTGCTTACTGATTTAATTGTTCAGTTGGGAGCGCTAGCTATTGCTTCAAATTCTGAAGTGTTGGAGTTTAGTGACAAGCTTGGGTGGTTTCTTAACAAAGAATTAAAAAATCACAATCTGCCTGGTGTTCTTCCTCCTGAAATAGTCAAACTTCCTTACCTGCAAGAAGTTGATTTTGCTTACAATTACCTTCATGGTAACATACCTCGAGAATGGGCTTTAACACGGCTGACAACAATCTCTCTTCTTGTTAATCGGTTGACAGGGGAAATACCAGACGCATTGTGGAATATTACTACTCTAACATCACTGAACCTTGAAGGAAACCAATTTACTGGTGCAATACCATCACAACTTGGGAGGTTAAGCAACTTGCAATACTTGTTGCTATCATCTAATCAATTTAATGGCACAATACCGACAACATTTGCTGGTTTGAAAAACTTAACAGATTTTCGGATAAATGATAACAACCTAAATGGATCCATACCTGAGTTCATAAAGAATTGGATACTACTCAAGAGATTAGAACTGCATGCAAGTGGACTTCAGGGACCAATTCCTTCAAAAATATCCATTCTGAAGAACTTACAAGAATTAAGGATCAGTGATATTAAAGGGCCAAAGCAGGATTTTCCTGAGTTGACAAACATGACGGGCATGGTTAGATTGGTTCTGAGAAATTGTAACATTGCTGGAAAGATTCCTTCATACGTGTGGAAGTTACCAGTCATGGAAATGCTGGACGTCAGCTTTAACCAGTTAACTGGGGAAATTCCAGAGGATATAAACATGGAGCGCATTAGATTTCTCTTTTTAACTGGCAATATGCTGAGTGGCAACCTACCAGAGTCAATTTTGATGGATGGTACTAATGTCGATCTTTCATACAATAACTTGACATGGCAAGGCCCTGGGCACCATGCTTGTAGAAAGAATTTGAATTTGAATCTGAACTTGTTCCGAAGTTCTTCGACCAGCAACACCTTACAAGAAAGTCTCCCCTGCTTAAAGGATTCCATCTGTTCAAAATATTCAAAATGTTGGTTCGTCAATTCTGGTGGGAATGACTTAACGATGGAGGTAAACAACAGAAACATTCTCTACAACGGGGATGCAGATATTGAAGGGGGGACAGCAAAATTGTACATTGATCGAGATATCTACTGGGGATTGAGTAGTACTGGAGATTTTATGGACGATTTTGATCACCAAAATACACGCTACACTTTATCCCTGCCTTCATCAAATTTGTCTGAGCTATATTCAACAGCACGTCGAAGTCCAATTACGCTCACTTATTTCCATCATTGCTTGGAAAATGGAAACTACTCAGTGACACTTCATTTTGCCGAGTTGCAATTTACAAATGATAAGACATATAAAAGCCTTGGAAGGCGGAAATTTGATATCTACATTCAGGATAGGTTGGTATTGGAGAATTTTGATATCGATGAGAAGGCGGGAGGAGCTCAAAAACCAACCGAAATGCAGTTTGCTTACATTAGTGTAGTTAATCATGTCCTGGAGATCCGATTCTATTGGGCTGGAAAAGGGACAACGAGGATTCCTGAAAGAGGAGTTTATGGTCCACTTATATCAGCTATTTCTGTTTATTCTGATCTTAAATATTGTCCAATCCGTGAAAGTAGTAAAAAGAAAACTGTGGCGCTTGTCGTTGGCATTACCGTTGGATTGTTATGCCTTGCTACAATCATCATAGTGGGACTTCTTTGGTGGAAAGGCAGTCTTAAAGCAATCAGGCGCAGTAAAGGGGGTACAGATCTTGCAGGAATAGAAGTGCAAACTGGAATTTTTACCTTGAAGCAAATAAAAGCTGCCACCAATCATTTTGATTCTTGTAATAAAATTGGAGAAGGTGGTTTTGGCCCTGTTTATAAGGGTCAATTGGTTGATGGTACTATTGTAGCAATCAAGCAGCTTTCATCGAAATCAAGGCAGGGAAATCGTGAATTTCTGAATGAGATAGGAATGATCTCTTGCTTGCAACACCCAAATCTAGTCAAGCTCCATGGATGCTGTATTGAAGGGGACCAATTGCTGTTGGTGTATGAATATTTGGAAAACAATAGTCTTGCCCGAGCACTATTTGGTCCGGATCACAGTCGGCTTAACCTAGATTGGCCAACTAGGCTTAGAATATGTATTGGTATAGCAAAAGGCTTAGCATATCTCCACGAGGAATCGAGCCTCAAAATTGTTCATAGAGACATCAAAGCTACTAATGTGCTACTGGATGGCGAACTGAATCCTAAAATATCTGATTTTGGTTTGGCTAAGCTCGACGATGAGGAGAAAACTCATATCACTACTAGAGTGGCTGGGACCATAGGATATATGGCTCCAGAATACGCACTTTGGGGTTATTTGACCTACAAAGCAGATGTTTATAGTTTTGGAGTTGTGGCCTTGGAAATTATCGGTGGAAGAAGCAACAATGATTATGTACCAAGTGAAACTTGTGTTTGCCTTCTAGACTGGGCCTGTCACTTGCAACAATCTGGGAACCTCATGGAGCTGGTAGATGAGAGGTTGAAGTCAGAAATTGACACGAAAGAAGCAGAAAACATGGTGAAAATAGCTCTTCTTTGCACCAATGCTTCACCATCAGTAAGGCCTGCAATGTCGGAAGTGGTGAACATGCTCGAAGGACGGATGAAAATTCCAGACCTGATCCCAGAACCGAGCAGTTACAATGAAGATCTGAGTTATTATGATATGTTTAATCTATCAAAGCTGATTCTTTAG 2844 40.51 MPTTIATERRPAKHTATNSCGVGSKLLTDLIVQLGALAIASNSEVLEFSDKLGWFLNKELKNHNLPGVLPPEIVKLPYLQEVDFAYNYLHGNIPREWALTRLTTISLLVNRLTGEIPDALWNITTLTSLNLEGNQFTGAIPSQLGRLSNLQYLLLSSNQFNGTIPTTFAGLKNLTDFRINDNNLNGSIPEFIKNWILLKRLELHASGLQGPIPSKISILKNLQELRISDIKGPKQDFPELTNMTGMVRLVLRNCNIAGKIPSYVWKLPVMEMLDVSFNQLTGEIPEDINMERIRFLFLTGNMLSGNLPESILMDGTNVDLSYNNLTWQGPGHHACRKNLNLNLNLFRSSSTSNTLQESLPCLKDSICSKYSKCWFVNSGGNDLTMEVNNRNILYNGDADIEGGTAKLYIDRDIYWGLSSTGDFMDDFDHQNTRYTLSLPSSNLSELYSTARRSPITLTYFHHCLENGNYSVTLHFAELQFTNDKTYKSLGRRKFDIYIQDRLVLENFDIDEKAGGAQKPTEMQFAYISVVNHVLEIRFYWAGKGTTRIPERGVYGPLISAISVYSDLKYCPIRESSKKKTVALVVGITVGLLCLATIIIVGLLWWKGSLKAIRRSKGGTDLAGIEVQTGIFTLKQIKAATNHFDSCNKIGEGGFGPVYKGQLVDGTIVAIKQLSSKSRQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNSLARALFGPDHSRLNLDWPTRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGELNPKISDFGLAKLDDEEKTHITTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIIGGRSNNDYVPSETCVCLLDWACHLQQSGNLMELVDERLKSEIDTKEAENMVKIALLCTNASPSVRPAMSEVVNMLEGRMKIPDLIPEPSSYNEDLSYYDMFNLSKLIL* 948
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 443043 466936 - Chy12G206490.1 Chy12g00049 237830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00049 947 CDD STKc_IRAK 649 916 - -
Chy12g00049 947 ProSiteProfiles Protein kinase domain profile. 643 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00049 947 SUPERFAMILY Protein kinase-like (PK-like) 627 941 IPR011009 -
Chy12g00049 947 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RFK1-RELATED 46 929 - -
Chy12g00049 947 Gene3D - 372 567 - -
Chy12g00049 947 SUPERFAMILY L domain-like 60 285 - -
Chy12g00049 947 Pfam Malectin domain 373 561 IPR021720 -
Chy12g00049 947 SMART serkin_6 643 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00049 947 Gene3D Ribonuclease Inhibitor 231 355 IPR032675 -
Chy12g00049 947 Gene3D Phosphorylase Kinase; domain 1 608 718 - -
Chy12g00049 947 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Chy12g00049 947 Gene3D Ribonuclease Inhibitor 166 230 IPR032675 -
Chy12g00049 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 765 777 IPR008271 GO:0004672|GO:0006468
Chy12g00049 947 Pfam Protein tyrosine and serine/threonine kinase 647 914 IPR001245 GO:0004672|GO:0006468
Chy12g00049 947 Gene3D Transferase(Phosphotransferase) domain 1 719 922 - -
Chy12g00049 947 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 46 929 - -
Chy12g00049 947 Gene3D Ribonuclease Inhibitor 40 165 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01129 Chy-Chr6:9758759 Chy12g00049 Chy-Chr12:443043 4.55E-77 dispersed
Chy07g00970 Chy-Chr7:14325037 Chy12g00049 Chy-Chr12:443043 4.74E-13 dispersed
Chy10g00188 Chy-Chr10:4643757 Chy12g00049 Chy-Chr12:443043 1.16E-12 dispersed
Chy12g00049 Chy-Chr12:443043 Chy07g01051 Chy-Chr7:15447287 8.70E-103 dispersed
Chy12g00049 Chy-Chr12:443043 Chy07g00003 Chy-Chr7:47337 3.31E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71596 PF07714 PK_Tyr_Ser-Thr 3.90E-48 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00049 - - csv:101204874 1706.81