Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy12g00053 | ATGACTTCCGGTACCAGAATGCCCACTTGGAAGGAAAGGGAAAACAACAAGCGTCGTGAGAGGCGTCGTCGTGCCATCGCTGCTAAGATCTTTCTTGGCTTGCGAATGTATGGAAACTACAAGCTTCCTAAGCACTGCGACAATAATGAAGTCCTTAAAGCCCTCTGTGATGAAGCTGGATGGACTGTCGAAGAAGACGGCACTACCTATCGGAAGGGTTGCAAGCCTGTGGAACGCAATATCATGGATGGGTCAGCTTCTGCAAGTCCATGTTCATCTTATCAGCCGAGCCCACGTGCATCTTATAACCCAAGTCCTGCGTCTTCTTCCTTCCCAAGCCCCAAATCTTCGCGTTACGCCATGAATGGCAATGACAATGGTACTGATCCCAATTCCCTCATCCCATGGCTGAAGAACCTCTCCTCGGGTTCATCATCAGCTTCCTCCAGGCTGCCTCACCATCTTTTTATTAATTGTGGCTCCATAAGTGCACCCGTCACCCCTCCATCAAGTTCCCCAACTGCTCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCAGCAGTTGCTCCTGCTTGGGCTGCACAGCGCTTCTCATGTTTGCCAACATCGACGCCACAAAGCCCTGGGCGTCAGGTGTTGGCTGATCCAGCATGGCTTGATAGTATACGGATTCCTCAAAGTGGACCATCATCTCCAACCTTCAGCCTTGTGGCAAGAAATCCTTTCGGATTTAAGGAGGCAATGTCTGCTGGAGTGTCTCGTAATTGGACTCCTACACAGAGCGGAACATGCTCGCCCACAGTTGCTGCAGGCATTGATCATACTTCAGACGTTCCTATGACAGATGGAACTGCAACAGACTTTGCCTTCGGAAGTTGTTCAATTGGGTTGGTGAAGCCTTGGGAAGGAGAGAGAATTCACGAGGAATGCATCTCTGATGATCTTGAACTTACACTTGGGAATTCAAGTACAAGGTAA | 984 | 49.39 | MTSGTRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVEEDGTTYRKGCKPVERNIMDGSASASPCSSYQPSPRASYNPSPASSSFPSPKSSRYAMNGNDNGTDPNSLIPWLKNLSSGSSSASSRLPHHLFINCGSISAPVTPPSSSPTARTPRKPNDWDNHPAVAPAWAAQRFSCLPTSTPQSPGRQVLADPAWLDSIRIPQSGPSSPTFSLVARNPFGFKEAMSAGVSRNWTPTQSGTCSPTVAAGIDHTSDVPMTDGTATDFAFGSCSIGLVKPWEGERIHEECISDDLELTLGNSSTR* | 328 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 481166 | 483612 | - | Chy12G206530.1 | Chy12g00053 | 237834 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy12g00053 | 327 | Pfam | BES1/BZR1 plant transcription factor, N-terminal | 3 | 141 | IPR008540 | - | |
| Chy12g00053 | 327 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 4 | 1 | 327 | - | - | |
| Chy12g00053 | 327 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 3-RELATED | 1 | 327 | IPR033264 | GO:0003700|GO:0006351|GO:0009742 | |
| Chy12g00053 | 327 | MobiDBLite | consensus disorder prediction | 81 | 127 | - | - | |
| Chy12g00053 | 327 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Chy12g00053 | 327 | MobiDBLite | consensus disorder prediction | 85 | 127 | - | - | |
| Chy12g00053 | 327 | MobiDBLite | consensus disorder prediction | 165 | 186 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy03g01481 | Chy-Chr3:17260030 | Chy12g00053 | Chy-Chr12:481166 | 3.99E-40 | dispersed | |
| Chy07g00983 | Chy-Chr7:14482967 | Chy12g00053 | Chy-Chr12:481166 | 3.75E-132 | dispersed | |
| Chy12g00053 | Chy-Chr12:481166 | Chy07g01103 | Chy-Chr7:15984448 | 1.58E-15 | dispersed | |
| Chy12g00053 | Chy-Chr12:481166 | Chy02g00673 | Chy-Chr2:4095543 | 4.57E-48 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 18810 | PF05687 | BES1_N | 4.30E-66 | No_clan | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy12g00053 | - | - | csv:101204637 | 593.578 |