Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00055 ATGGATGAAGCTCAGGGAGGCGGCTTGACTTCACTGCCTCCATTTTTAGTCAAAACATATGATATGGTTGATGACCCTTCAACCAATTCGATTGTTTCATGGAGTTCTAGTGATAAAAGCTTTGTTGTTTGGAATCCACTGGAGTTCTCATCAGTTTTGTTGCCTAAATTCTTTAAGCATAGCAACTTCTCAAGCTTCATCAGGCAGCTCAATACTTATGGGTTCAGAAAGGTGGATCCTGAACAATGGGAATTTGCCAATGAGGATTTTGTTAGAGGTAAGCCACATCTGATGAAGAACATCCACAGGAGAAAACCAATCCATAGTCATTCTTTACAGAACCTTCATGGTCAAGGAATATCTCCTCTAACTGAAGTGGAAAGGAACAGTTTTAAGGATGACATCGAAAGGCTGAAACTGGATAAAGAACAGCTTCTACTTGAGTTGCAAAAGTACGAACAAGAATATCAAGGAGTTGGATTGCAAATGCAAAATCTGAAAGACCGATTTCAACGTGTTCAACAGGAGATGCAATTATTTATCAGTTTGATGGCTCGCCTTTTGCAGAAACCAGGACTTCACTTGGATCTCCTGCCACAATTGGAAACTGCTGAGAGAAAGAGGAGATTACCTAGAGTTTCTTACAACATTAGTGAAGACAGCCTTGAGGACAATCATTTAGGGACAACTCAAACCATTGGTAGAGACGATATGGGTTGTAGTTTTGATCCAATTTTGGAAAAAGAGCAGTTAGAACTTCTTGAGACATCTCTGACCTTTTGGGAAGGAATTATCCATAGTTATGATGAAACAGTTAGTCCACTTGATTCAAGCTCAAACCTGGAGTTGGTTGGATCTGTTAGTCATGCCAGTAGTCCTGCTATATCTTGCAGACTAGTTAGGGAGGAATTTCGGTGTAAATCACCTGGAATCGACATGAATTTGGAGCCCATGGCTACTGTTGCTCCTGACTCTGTAGCTTCAAAAGATCAAGCAGCTGGAGTAAATGCTCCATTACCAACTGGATTCAATGATGTTTTCTGGCAGCAATTCTTGACAGAGAATCCTGGTGCATCTGATCCACAAGAAGTTCAATCAGCCAGAAAAGATTCGGATGTCATAAACGAAGAAAACAGACAGAGTGATCACGGAAAATTTTGGTGGAACACGAGGAGTGTAAATAATGTCGTAGAACAGATAGGGCACCTTAAACCAGCTGAGAAATTTTGA 1230 40.73 MDEAQGGGLTSLPPFLVKTYDMVDDPSTNSIVSWSSSDKSFVVWNPLEFSSVLLPKFFKHSNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGKPHLMKNIHRRKPIHSHSLQNLHGQGISPLTEVERNSFKDDIERLKLDKEQLLLELQKYEQEYQGVGLQMQNLKDRFQRVQQEMQLFISLMARLLQKPGLHLDLLPQLETAERKRRLPRVSYNISEDSLEDNHLGTTQTIGRDDMGCSFDPILEKEQLELLETSLTFWEGIIHSYDETVSPLDSSSNLELVGSVSHASSPAISCRLVREEFRCKSPGIDMNLEPMATVAPDSVASKDQAAGVNAPLPTGFNDVFWQQFLTENPGASDPQEVQSARKDSDVINEENRQSDHGKFWWNTRSVNNVVEQIGHLKPAEKF* 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 492654 493993 + Chy12G206550.1 Chy12g00055 237836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00055 409 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy12g00055 409 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 390 - -
Chy12g00055 409 Coils Coil 128 169 - -
Chy12g00055 409 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy12g00055 409 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy12g00055 409 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy12g00055 409 Gene3D - 9 105 IPR036388 -
Chy12g00055 409 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 390 IPR027725 -
Chy12g00055 409 MobiDBLite consensus disorder prediction 365 380 - -
Chy12g00055 409 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Chy12g00055 409 SUPERFAMILY Winged helix DNA-binding domain 11 104 IPR036390 -
Chy12g00055 409 MobiDBLite consensus disorder prediction 354 380 - -
Chy12g00055 409 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00055 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101204390 804.668
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy02g00208 Chy12g00055 CCT
Chy02g00208 Chy12g00055 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00217 Chy-Chr10:5495462 Chy12g00055 Chy-Chr12:492654 2.95E-45 dispersed
Chy11g00979 Chy-Chr11:13762561 Chy12g00055 Chy-Chr12:492654 1.02E-66 dispersed
Chy06g00340 Chy-Chr6:2255449 Chy12g00055 Chy-Chr12:492654 9.43E-62 transposed
Chy12g00055 Chy-Chr12:492654 Chy02g00208 Chy-Chr2:1394306 7.29E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g260 Blo01g00868 Blo11g00264 . . . . Bma14g00978 Bma01g01469 Cmo13g00611 . . Cma07g00159 . Car07g00139 . . . . . . . . . . Cla01g02342 Cam01g2455 Cec04g2104 Cco04g2180 Clacu01g2475 Cmu01g2342 Cre04g2010 . Cone5ag1639 . . Lsi01g00219 Csa06g03726 Chy12g00055 Cme08g00202 . . . Bda07g00962 . . . . Sed08g2732 . Cmo07g00157 Cma13g00581 . Car13g00464 . Cpe19g01087 Cpe20g00480 Bhi08g02149 Tan05g2532 Cmetu12g1147 Lac10g0985 Hepe07g1835 . . Cla03g00695 Cam03g0699 Cec03g0671 Cco03g0708 Clacu03g0743 Cmu03g1335 Cre03g0980 Lsi02g00833 Csa01g02297 Chy02g00208 Cme12g01263
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g01560 . 79 319 HSF AT4G17750 51.4 1.0e-59 228.0
Chy03g01653 . 43 243 HSF AT4G17750 52.7 1.1e-58 224.6
Chy05g00425 . 26 226 HSF AT4G17750 54.8 1.2e-57 221.1
Chy05g01447 . 58 251 HSF AT4G17750 50.7 9.9e-47 184.9
Chy12g00055 CCT,ECH 13 157 HSF AT4G17750 55.4 9.6e-42 168.3
Chy11g00979 . 12 114 HSF AT4G17750 68.9 5.3e-40 162.5
Chy03g01552 . 20 118 HSF AT4G17750 71.7 5.8e-39 159.1
Chy07g00142 . 20 118 HSF AT4G17750 69.7 2.2e-38 157.1
Chy09g01192 CCT 20 117 HSF AT4G17750 69.4 9.3e-37 151.8
Chy05g00425 . 41 226 HSF AT5G16820 56.7 1.6e-57 220.7
Chy01g01560 . 80 287 HSF AT5G16820 54.2 3.9e-56 216.1
Chy03g01653 . 44 243 HSF AT5G16820 53.6 1.5e-55 214.2
Chy05g01447 . 59 251 HSF AT5G16820 51.0 1.5e-44 177.6
Chy12g00055 CCT,ECH 9 155 HSF AT5G16820 56.7 2.9e-43 173.3
Chy11g00979 . 9 115 HSF AT5G16820 68.2 1.6e-38 157.5
Chy06g02159 . 13 514 HSF AT1G32330 53.4 1.3e-120 430.3
Chy01g01560 . 68 285 HSF AT1G32330 51.8 1.4e-58 224.2
Chy05g00425 . 27 226 HSF AT1G32330 53.6 7.1e-58 221.9
Chy03g01653 . 32 224 HSF AT1G32330 54.6 5.6e-55 212.2
Chy12g00055 CCT,ECH 13 157 HSF AT1G32330 55.9 1.9e-42 170.6
Chy11g00979 . 8 118 HSF AT1G32330 66.1 3.9e-40 162.9
Chy03g01552 . 20 117 HSF AT1G32330 71.4 3.7e-38 156.4
Chy07g00142 . 22 117 HSF AT1G32330 71.9 1.1e-37 154.8
Chy01g01560 . 80 297 HSF AT3G02990 53.2 1.1e-58 224.6
Chy05g00425 . 41 226 HSF AT3G02990 55.8 2.0e-57 220.3
Chy03g01653 . 44 243 HSF AT3G02990 52.2 1.3e-56 217.6
Chy12g00055 CCT,ECH 9 157 HSF AT3G02990 53.0 7.7e-41 165.2
Chy11g00979 . 13 106 HSF AT3G02990 72.3 3.6e-38 156.4
Chy01g01560 . 68 284 HSF AT2G26150 56.0 8.7e-66 247.7
Chy06g02159 . 29 243 HSF AT2G26150 58.8 6.4e-61 231.5
Chy05g01447 . 48 247 HSF AT2G26150 52.5 3.2e-52 202.6
Chy12g00055 CCT,ECH 5 155 HSF AT2G26150 53.3 3.3e-41 166.0
Chy11g00979 . 5 118 HSF AT2G26150 60.5 6.5e-37 151.8
Chy04g01969 . 116 361 HSF AT5G03720 56.8 6.3e-71 265.0
Chy11g00979 . 2 140 HSF AT4G18880 59.7 7.5e-45 178.3
Chy06g00340 . 1 436 HSF AT4G13980 51.0 2.4e-103 372.9
Chy11g00979 . 4 140 HSF AT4G13980 58.4 2.5e-39 160.2
Chy01g01560 . 39 404 HSF AT3G22830 51.2 6.1e-95 344.7
Chy03g01653 . 32 241 HSF AT3G22830 55.2 5.6e-64 241.9
Chy06g02159 . 29 242 HSF AT3G22830 59.3 3.6e-63 239.2
Chy12g00055 CCT,ECH 13 157 HSF AT3G22830 52.7 9.0e-38 154.8
Chy01g01560 . 67 379 HSF AT3G51910 50.6 2.1e-70 262.7
Chy05g00425 . 26 323 HSF AT3G51910 52.7 1.3e-69 260.0
Chy03g01653 . 32 224 HSF AT3G51910 57.0 1.4e-55 213.4
Chy03g01653 . 32 231 HSF AT3G63350 53.2 9.9e-52 200.7
Chy11g00979 . 5 140 HSF AT3G63350 57.2 1.1e-37 154.1
Chy06g00930 CCT 17 190 HSF AT4G36990 50.9 6.1e-41 164.9
Chy09g01192 CCT 16 330 HSF AT4G11660 50.7 4.4e-79 292.0
Chy07g00142 . 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Chy03g01552 . 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Chy02g01549 . 26 119 HSF AT4G11660 71.3 1.4e-37 154.1
Chy06g02159 . 31 126 HSF AT4G11660 68.8 7.1e-37 151.8
Chy08g00462 . 37 215 HSF AT2G41690 53.1 1.4e-49 193.4
Chy04g01608 . 12 221 HSF AT2G41690 50.5 4.9e-47 184.9
Chy03g01552 . 19 374 HSF AT1G46264 52.0 1.4e-87 320.1
Chy07g00142 . 19 330 HSF AT1G46264 53.8 1.2e-83 307.0
Chy02g01549 . 18 200 HSF AT1G46264 53.3 1.1e-49 194.1
Chy06g02159 . 31 138 HSF AT1G46264 72.2 2.6e-41 166.4
Chy11g00979 . 5 105 HSF AT1G46264 68.3 2.9e-37 152.9
Chy05g00425 . 32 146 HSF AT1G46264 58.3 1.5e-36 150.6
Chy02g01878 CCT 10 292 HSF AT3G24520 51.3 3.2e-65 245.7
Chy01g01560 . 79 319 HSF AT4G17750 51.4 1.0e-59 228.0
Chy03g01653 . 43 243 HSF AT4G17750 52.7 1.1e-58 224.6
Chy05g00425 . 26 226 HSF AT4G17750 54.8 1.2e-57 221.1
Chy05g01447 . 58 251 HSF AT4G17750 50.7 9.9e-47 184.9
Chy12g00055 CCT,ECH 13 157 HSF AT4G17750 55.4 9.6e-42 168.3
Chy11g00979 . 12 114 HSF AT4G17750 68.9 5.3e-40 162.5
Chy03g01552 . 20 118 HSF AT4G17750 71.7 5.8e-39 159.1
Chy07g00142 . 20 118 HSF AT4G17750 69.7 2.2e-38 157.1
Chy09g01192 CCT 20 117 HSF AT4G17750 69.4 9.3e-37 151.8
Chy05g00425 . 41 226 HSF AT5G16820 56.7 1.6e-57 220.7
Chy01g01560 . 80 287 HSF AT5G16820 54.2 3.9e-56 216.1
Chy03g01653 . 44 243 HSF AT5G16820 53.6 1.5e-55 214.2
Chy05g01447 . 59 251 HSF AT5G16820 51.0 1.5e-44 177.6
Chy12g00055 CCT,ECH 9 155 HSF AT5G16820 56.7 2.9e-43 173.3
Chy11g00979 . 9 115 HSF AT5G16820 68.2 1.6e-38 157.5
Chy06g02159 . 13 514 HSF AT1G32330 53.4 1.3e-120 430.3
Chy01g01560 . 68 285 HSF AT1G32330 51.8 1.4e-58 224.2
Chy05g00425 . 27 226 HSF AT1G32330 53.6 7.1e-58 221.9
Chy03g01653 . 32 224 HSF AT1G32330 54.6 5.6e-55 212.2
Chy12g00055 CCT,ECH 13 157 HSF AT1G32330 55.9 1.9e-42 170.6
Chy11g00979 . 8 118 HSF AT1G32330 66.1 3.9e-40 162.9
Chy03g01552 . 20 117 HSF AT1G32330 71.4 3.7e-38 156.4
Chy07g00142 . 22 117 HSF AT1G32330 71.9 1.1e-37 154.8
Chy01g01560 . 80 297 HSF AT3G02990 53.2 1.1e-58 224.6
Chy05g00425 . 41 226 HSF AT3G02990 55.8 2.0e-57 220.3
Chy03g01653 . 44 243 HSF AT3G02990 52.2 1.3e-56 217.6
Chy12g00055 CCT,ECH 9 157 HSF AT3G02990 53.0 7.7e-41 165.2
Chy11g00979 . 13 106 HSF AT3G02990 72.3 3.6e-38 156.4
Chy01g01560 . 68 284 HSF AT2G26150 56.0 8.7e-66 247.7
Chy06g02159 . 29 243 HSF AT2G26150 58.8 6.4e-61 231.5
Chy05g01447 . 48 247 HSF AT2G26150 52.5 3.2e-52 202.6
Chy12g00055 CCT,ECH 5 155 HSF AT2G26150 53.3 3.3e-41 166.0
Chy11g00979 . 5 118 HSF AT2G26150 60.5 6.5e-37 151.8
Chy04g01969 . 116 361 HSF AT5G03720 56.8 6.3e-71 265.0
Chy11g00979 . 2 140 HSF AT4G18880 59.7 7.5e-45 178.3
Chy06g00340 . 1 436 HSF AT4G13980 51.0 2.4e-103 372.9
Chy11g00979 . 4 140 HSF AT4G13980 58.4 2.5e-39 160.2
Chy01g01560 . 39 404 HSF AT3G22830 51.2 6.1e-95 344.7
Chy03g01653 . 32 241 HSF AT3G22830 55.2 5.6e-64 241.9
Chy06g02159 . 29 242 HSF AT3G22830 59.3 3.6e-63 239.2
Chy12g00055 CCT,ECH 13 157 HSF AT3G22830 52.7 9.0e-38 154.8
Chy01g01560 . 67 379 HSF AT3G51910 50.6 2.1e-70 262.7
Chy05g00425 . 26 323 HSF AT3G51910 52.7 1.3e-69 260.0
Chy03g01653 . 32 224 HSF AT3G51910 57.0 1.4e-55 213.4
Chy03g01653 . 32 231 HSF AT3G63350 53.2 9.9e-52 200.7
Chy11g00979 . 5 140 HSF AT3G63350 57.2 1.1e-37 154.1
Chy06g00930 CCT 17 190 HSF AT4G36990 50.9 6.1e-41 164.9
Chy09g01192 CCT 16 330 HSF AT4G11660 50.7 4.4e-79 292.0
Chy07g00142 . 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Chy03g01552 . 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Chy02g01549 . 26 119 HSF AT4G11660 71.3 1.4e-37 154.1
Chy06g02159 . 31 126 HSF AT4G11660 68.8 7.1e-37 151.8
Chy08g00462 . 37 215 HSF AT2G41690 53.1 1.4e-49 193.4
Chy04g01608 . 12 221 HSF AT2G41690 50.5 4.9e-47 184.9
Chy03g01552 . 19 374 HSF AT1G46264 52.0 1.4e-87 320.1
Chy07g00142 . 19 330 HSF AT1G46264 53.8 1.2e-83 307.0
Chy02g01549 . 18 200 HSF AT1G46264 53.3 1.1e-49 194.1
Chy06g02159 . 31 138 HSF AT1G46264 72.2 2.6e-41 166.4
Chy11g00979 . 5 105 HSF AT1G46264 68.3 2.9e-37 152.9
Chy05g00425 . 32 146 HSF AT1G46264 58.3 1.5e-36 150.6
Chy02g01878 CCT 10 292 HSF AT3G24520 51.3 3.2e-65 245.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001764 2 9 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 5 4 2 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18811 PF00447 HSF_DNA-bind 4.20E-31 CL0123 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g00055 Chy_Chr12 FPKM 9.853778 7.139534 10.082565 14.20509 11.390334 7.466026 12.138597 7.485079 6.661359 11.674439