Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00056 ATGGCTGCCGCTGCGATTTTTTCGTCTTTACGAAGGAGGAGATCGCCGTCGTTGGAGGCTTTTTTGGCCCCCGTTGACCTATCCGATGTGGCTTTAGTTCAAACCTTGACGATAGTGGCGACGGAGCTTGTTTCTCGATTTTCAGAGAAGTCTTTCTTCTTCCAGCGAAGGAATTCACGTTCTCTGATAAGAAAATTGGAGGTTTGTCTAGTCTTTTTGGAGTTTTTGAAGGAAACTGACGCGAATTTGCCTCACACGGCTTTACTCTGTTTGAAGGAGCTTTATTTGTTGTTGTATCGGTCTAAGATACTTCTTGATTATTGCTTTGAATCTAGTAAGTTGTGGCTGTTACTTCAGAACCATTCGATTTCGGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTTGATGTTTTTCCTATTGAGGAAGTTGAATTGGGGGCGGATGTTAGAGAGCAGGTTGAGCTTTTGCAGAAGCAGTTGAGAAGGACTAGACTGTTTGTTGATGAACGTGATGAGGTTTTGAGGACTCGTTTCCTTTCGTTTCTTGATGAGTTTGAGAACGGGAGGCTTCCCAATCCTAGGGAAATGAGGGAGTTTTTTGTGGATAAGTTGAAGATTTGGAATGCGAAGAGTTGTAGAGCTGAAATTGAGTTCTTGGAGGAGCAGATTGTCAATCATGAGGGTGATATTGAGCCCACGGTGGCGGTGTTAAACGGTTTCGTTGCTTTTACTAGATATAGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGATGTTGATTCAGGCACATCAAATCAGAAAAAGCTAAAGAAGAACTTGATTACTCAGGAGATTGCCGAGACGTTTCTAACAATTCCGAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAAGATCCTGTGACCATTTCTACAGGTCAGACATACGATCGCAGCTCGATTACTAGATGGATGGAAGAAGGGCACAACACTTGTCCAAAGACGGGGCAAATGCTTATTCACACCCGCCTCGCTCCCAACCGCGCATTAAGGAATTTGATTGTGCAGTGGTGCATTGCACATGGAGTTCCTTATGATCCACCAGATGGGATGGATGCATCTGCAGAGAGCTATGCTATTGCTTCTCCCACACGAGCTGCACTAGAAGCCAATAGAGCAACAGCTATGATCCTTATTCAACAGTTATCCATTGGATCACAAGATGCAAAGACGATTGCTGCTCGTGAGATTCGTTTGTTAGCCAAAACAGGGAAAGAGAACCGTGCTTTCATTGCAGAAGCCGGTGCCATCCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACGCAGTTGCACAGGAGAATTCTGTAACTGCTATGCTTAACCTCTCCATATATGACAAGAACAAAAGTTTGATAATGAGTGAGGTAGGGTGTTTAGGAGCAATAACCGACGTGTTAAGATTCGGACACAGTACAGAAGCACGGGAAAACGCCGCAGCTACGTTATTCAGCCTGTCTGCAGTTCATGACTACAAGAAGAGAATAGCAGAAGAAGGTGGTGCAGTTGAAGCCTTGGCAGGGTTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTCTCAACCCACACGGATAACTGCGTTCAGATGATAGAGGCCGGGGCAGTAACAGCTCTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAGGAAGCAGCCGGTGCATTGGCTTTGATTGTTAGACAGCCCGTTGGGGCCGAAGCAGTCGCCAAAGAGGAGAGAGCTGTAGCAGGATTGATAGCAATGATGCGATGTGGTACGCCAAGAGGTAAAGAGAATGCAGTAGCAGCTTTGCTCGAGTTATGCCGAAGTGGTGGAGCTGCCACAACCGAACAAGTGTTCAAGGCTCCGGCTTTGGCTGGCTTGCTCCAAACACTCCTATTCACCGGTACGAAGCGAGCGCGAAGAAAGGCTGCTTCACTAGCTAGAGTGTTCCAAAGATGTGAGCATGTCACAATGCATTACGGCGGATTAGGGGTTGGTTATGCCTATGCAAGTAACTCGGCTTCAAACAGAGAAACAAGCTTTGCTAGCGAGGTGTCTGTGCCGATATCTATCTCGGTACCTGTCGTATAA 2148 45.86 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLTIVATELVSRFSEKSFFFQRRNSRSLIRKLEVCLVFLEFLKETDANLPHTALLCLKELYLLLYRSKILLDYCFESSKLWLLLQNHSISGHFNDLNLELLTFFDVFPIEEVELGADVREQVELLQKQLRRTRLFVDERDEVLRTRFLSFLDEFENGRLPNPREMREFFVDKLKIWNAKSCRAEIEFLEEQIVNHEGDIEPTVAVLNGFVAFTRYSRFFLFGFEEDDVDSGTSNQKKLKKNLITQEIAETFLTIPRDFCCPISLDLMKDPVTISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIVQWCIAHGVPYDPPDGMDASAESYAIASPTRAALEANRATAMILIQQLSIGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNAVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGAITDVLRFGHSTEARENAAATLFSLSAVHDYKKRIAEEGGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVQMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVAKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYASNSASNRETSFASEVSVPISISVPVV* 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 498638 500785 - Chy12G206560.1 Chy12g00056 237837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00056 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Chy12g00056 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Chy12g00056 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Chy12g00056 715 SUPERFAMILY RING/U-box 277 362 - -
Chy12g00056 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Chy12g00056 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 696 - -
Chy12g00056 715 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Chy12g00056 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Chy12g00056 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Chy12g00056 715 Coils Coil 212 232 - -
Chy12g00056 715 SMART arm_5 506 546 IPR000225 GO:0005515
Chy12g00056 715 SMART arm_5 463 504 IPR000225 GO:0005515
Chy12g00056 715 SMART arm_5 421 461 IPR000225 GO:0005515
Chy12g00056 715 SMART arm_5 587 627 IPR000225 GO:0005515
Chy12g00056 715 SMART arm_5 547 585 IPR000225 GO:0005515
Chy12g00056 715 CDD RING-Ubox_PUB 292 334 IPR045210 -
Chy12g00056 715 Gene3D - 515 667 IPR011989 -
Chy12g00056 715 PANTHER U BOX DOMAIN-CONTAINING 11 696 - -
Chy12g00056 715 SUPERFAMILY ARM repeat 394 669 IPR016024 -
Chy12g00056 715 Gene3D - 393 514 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00056 - - - csv:101204151 1290.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00196 Chy-Chr3:1826834 Chy12g00056 Chy-Chr12:498638 2.12E-123 dispersed
Chy08g00584 Chy-Chr8:13493583 Chy12g00056 Chy-Chr12:498638 1.15E-130 dispersed
Chy10g00911 Chy-Chr10:14788771 Chy12g00056 Chy-Chr12:498638 4.58E-84 dispersed
Chy11g01242 Chy-Chr11:18538898 Chy12g00056 Chy-Chr12:498638 2.59E-87 dispersed
Chy12g00056 Chy-Chr12:498638 Chy12g00185 Chy-Chr12:2245357 1.50E-96 dispersed
Chy12g00056 Chy-Chr12:498638 Chy12g01281 Chy-Chr12:17336515 9.79E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g256 . Blo11g00265 . . . . Bma14g00979 . Cmo13g00612 Cmo18g00411 . . . . . Cpe09g00791 . . . . . . . . . . . . . . . . Cone5ag1640 . . . . Chy12g00056 . . . . Bda07g00963 . . . . Sed08g2733 . . Cma13g00582 Cma18g00432 Car13g00466 Car18g00408 . Cpe20g00479 Bhi08g02151 Tan05g2530 Cmetu12g0678 Lac10g0984 Hepe07g1836 . . Cla03g00696 Cam03g0697 Cec03g0670 Cco03g0707 Clacu03g0744 Cmu03g1336 Cre03g0979 Lsi02g00832 Csa01g02298 . Cme12g01264
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008312 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy12g00056 Chy_Chr12 FPKM 13.617786 15.023274 17.702694 18.049009 12.088696 11.115915 12.671188 10.474672 10.23039 11.676056