Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00056 ATGGCTGCCGCTGCGATTTTTTCGTCTTTACGAAGGAGGAGATCGCCGTCGTTGGAGGCTTTTTTGGCCCCCGTTGACCTATCCGATGTGGCTTTAGTTCAAACCTTGACGATAGTGGCGACGGAGCTTGTTTCTCGATTTTCAGAGAAGTCTTTCTTCTTCCAGCGAAGGAATTCACGTTCTCTGATAAGAAAATTGGAGGTTTGTCTAGTCTTTTTGGAGTTTTTGAAGGAAACTGACGCGAATTTGCCTCACACGGCTTTACTCTGTTTGAAGGAGCTTTATTTGTTGTTGTATCGGTCTAAGATACTTCTTGATTATTGCTTTGAATCTAGTAAGTTGTGGCTGTTACTTCAGAACCATTCGATTTCGGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTTGATGTTTTTCCTATTGAGGAAGTTGAATTGGGGGCGGATGTTAGAGAGCAGGTTGAGCTTTTGCAGAAGCAGTTGAGAAGGACTAGACTGTTTGTTGATGAACGTGATGAGGTTTTGAGGACTCGTTTCCTTTCGTTTCTTGATGAGTTTGAGAACGGGAGGCTTCCCAATCCTAGGGAAATGAGGGAGTTTTTTGTGGATAAGTTGAAGATTTGGAATGCGAAGAGTTGTAGAGCTGAAATTGAGTTCTTGGAGGAGCAGATTGTCAATCATGAGGGTGATATTGAGCCCACGGTGGCGGTGTTAAACGGTTTCGTTGCTTTTACTAGATATAGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGATGTTGATTCAGGCACATCAAATCAGAAAAAGCTAAAGAAGAACTTGATTACTCAGGAGATTGCCGAGACGTTTCTAACAATTCCGAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAAGATCCTGTGACCATTTCTACAGGTCAGACATACGATCGCAGCTCGATTACTAGATGGATGGAAGAAGGGCACAACACTTGTCCAAAGACGGGGCAAATGCTTATTCACACCCGCCTCGCTCCCAACCGCGCATTAAGGAATTTGATTGTGCAGTGGTGCATTGCACATGGAGTTCCTTATGATCCACCAGATGGGATGGATGCATCTGCAGAGAGCTATGCTATTGCTTCTCCCACACGAGCTGCACTAGAAGCCAATAGAGCAACAGCTATGATCCTTATTCAACAGTTATCCATTGGATCACAAGATGCAAAGACGATTGCTGCTCGTGAGATTCGTTTGTTAGCCAAAACAGGGAAAGAGAACCGTGCTTTCATTGCAGAAGCCGGTGCCATCCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACGCAGTTGCACAGGAGAATTCTGTAACTGCTATGCTTAACCTCTCCATATATGACAAGAACAAAAGTTTGATAATGAGTGAGGTAGGGTGTTTAGGAGCAATAACCGACGTGTTAAGATTCGGACACAGTACAGAAGCACGGGAAAACGCCGCAGCTACGTTATTCAGCCTGTCTGCAGTTCATGACTACAAGAAGAGAATAGCAGAAGAAGGTGGTGCAGTTGAAGCCTTGGCAGGGTTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTCTCAACCCACACGGATAACTGCGTTCAGATGATAGAGGCCGGGGCAGTAACAGCTCTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAGGAAGCAGCCGGTGCATTGGCTTTGATTGTTAGACAGCCCGTTGGGGCCGAAGCAGTCGCCAAAGAGGAGAGAGCTGTAGCAGGATTGATAGCAATGATGCGATGTGGTACGCCAAGAGGTAAAGAGAATGCAGTAGCAGCTTTGCTCGAGTTATGCCGAAGTGGTGGAGCTGCCACAACCGAACAAGTGTTCAAGGCTCCGGCTTTGGCTGGCTTGCTCCAAACACTCCTATTCACCGGTACGAAGCGAGCGCGAAGAAAGGCTGCTTCACTAGCTAGAGTGTTCCAAAGATGTGAGCATGTCACAATGCATTACGGCGGATTAGGGGTTGGTTATGCCTATGCAAGTAACTCGGCTTCAAACAGAGAAACAAGCTTTGCTAGCGAGGTGTCTGTGCCGATATCTATCTCGGTACCTGTCGTATAA 2148 45.86 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLTIVATELVSRFSEKSFFFQRRNSRSLIRKLEVCLVFLEFLKETDANLPHTALLCLKELYLLLYRSKILLDYCFESSKLWLLLQNHSISGHFNDLNLELLTFFDVFPIEEVELGADVREQVELLQKQLRRTRLFVDERDEVLRTRFLSFLDEFENGRLPNPREMREFFVDKLKIWNAKSCRAEIEFLEEQIVNHEGDIEPTVAVLNGFVAFTRYSRFFLFGFEEDDVDSGTSNQKKLKKNLITQEIAETFLTIPRDFCCPISLDLMKDPVTISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIVQWCIAHGVPYDPPDGMDASAESYAIASPTRAALEANRATAMILIQQLSIGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNAVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGAITDVLRFGHSTEARENAAATLFSLSAVHDYKKRIAEEGGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVQMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVAKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYASNSASNRETSFASEVSVPISISVPVV* 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 498638 500785 - Chy12G206560.1 Chy12g00056 237837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00056 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Chy12g00056 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Chy12g00056 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Chy12g00056 715 SUPERFAMILY RING/U-box 277 362 - -
Chy12g00056 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Chy12g00056 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 696 - -
Chy12g00056 715 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Chy12g00056 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Chy12g00056 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Chy12g00056 715 Coils Coil 212 232 - -
Chy12g00056 715 SMART arm_5 506 546 IPR000225 GO:0005515
Chy12g00056 715 SMART arm_5 463 504 IPR000225 GO:0005515
Chy12g00056 715 SMART arm_5 421 461 IPR000225 GO:0005515
Chy12g00056 715 SMART arm_5 587 627 IPR000225 GO:0005515
Chy12g00056 715 SMART arm_5 547 585 IPR000225 GO:0005515
Chy12g00056 715 CDD RING-Ubox_PUB 292 334 IPR045210 -
Chy12g00056 715 Gene3D - 515 667 IPR011989 -
Chy12g00056 715 PANTHER U BOX DOMAIN-CONTAINING 11 696 - -
Chy12g00056 715 SUPERFAMILY ARM repeat 394 669 IPR016024 -
Chy12g00056 715 Gene3D - 393 514 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00196 Chy-Chr3:1826834 Chy12g00056 Chy-Chr12:498638 2.12E-123 dispersed
Chy08g00584 Chy-Chr8:13493583 Chy12g00056 Chy-Chr12:498638 1.15E-130 dispersed
Chy10g00911 Chy-Chr10:14788771 Chy12g00056 Chy-Chr12:498638 4.58E-84 dispersed
Chy11g01242 Chy-Chr11:18538898 Chy12g00056 Chy-Chr12:498638 2.59E-87 dispersed
Chy12g00056 Chy-Chr12:498638 Chy12g00185 Chy-Chr12:2245357 1.50E-96 dispersed
Chy12g00056 Chy-Chr12:498638 Chy12g01281 Chy-Chr12:17336515 9.79E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00056 - - csv:101204151 1290.02