Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00064 ATGGATGATGTTTCCTTCAACCATAATAACCACCACCAATTCTATTCATCTGATCCATTCGAAGATTCCGACGAATTAAAACCCACCCCCGACTCTCCTCCTCCTAGTTCCACCATCACCGCCGCCGCCACCAAAAAGGGCAGAAGAGGAATGAAGAAGAAAATTGTATCAGTGAAAATTAACGGCGACAGCCCAAGAAATTCGTCCGGTTCCGCAACTCCACCTTCAGATTCATGGGCTTGGAGAAAGTATGGTCAAAAACCCATCAAAGGCTCCCCTTATCCGAGGGCGTATTATAGGTGTAGTAGTTCAAAGGGATGTCCAGCGAGGAAGCAAGTAGAGAGGAATCGTCTTGATCCAACCACGTTGGTCATTACATATTCGTGTGAGCATAATCATTCCGGTCCGGTTTCTAGAAACAACAACAACAACAATAATCAGAATAACCAGATGGTCGTGATGAAACCCGGTTCACCAGAGACGATTGCGGTTCATCAAGAACCGGAAGTGGTAGAGAAATTTGTGGAGATTGGGGGGGGAGAGGAGTCGTTGATAACGGCGGATGAGTTTAGTTGGTTTGGGGAAATGGAAACGACGTCGTCTACGGTACTCGAAAGCTCCATTTTTTCGGGCAGAGCGTCCACTGGATTGGTGGATCATTCAATTTCTAGTGACGTGGCAATGCTTTTTCCAATGGGGGATGATGACGTGGATGAGTCACTCTTTGCGGATCTCGGGGAGTTGCCGGAGTGTTCACTCGTGTTCCGGCGCGGCGGAGGTCGTGGATTACCGGTGGATGAACAACCGGCGGCAGCCCAGCGTCGGATCACGCCTTGGTGTGGGACAACCACATGA 855 49.36 MDDVSFNHNNHHQFYSSDPFEDSDELKPTPDSPPPSSTITAAATKKGRRGMKKKIVSVKINGDSPRNSSGSATPPSDSWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTTLVITYSCEHNHSGPVSRNNNNNNNQNNQMVVMKPGSPETIAVHQEPEVVEKFVEIGGGEESLITADEFSWFGEMETTSSTVLESSIFSGRASTGLVDHSISSDVAMLFPMGDDDVDESLFADLGELPECSLVFRRGGGRGLPVDEQPAAAQRRITPWCGTTT* 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 562489 563510 - Chy12G206640.1 Chy12g00064 237845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00064 284 MobiDBLite consensus disorder prediction 1 83 - -
Chy12g00064 284 SUPERFAMILY WRKY DNA-binding domain 72 135 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy12g00064 284 Pfam WRKY DNA -binding domain 77 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy12g00064 284 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 28 282 IPR044810 GO:0003700
Chy12g00064 284 MobiDBLite consensus disorder prediction 61 76 - -
Chy12g00064 284 ProSiteProfiles WRKY domain profile. 76 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy12g00064 284 SMART WRKY_cls 75 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy12g00064 284 Gene3D WRKY domain 63 137 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy12g00064 284 PANTHER OS01G0750100 PROTEIN 28 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00146 Chy-Chr6:929471 Chy12g00064 Chy-Chr12:562489 5.93E-31 dispersed
Chy12g00064 Chy-Chr12:562489 Chy12g00450 Chy-Chr12:5585747 1.19E-33 dispersed
Chy01g00328 Chy-Chr1:2345462 Chy12g00064 Chy-Chr12:562489 6.07E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18812 PF03106 WRKY 2.00E-24 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00064 - - csv:101203902 537.339