Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00068 ATGGTTTCTGATGTTCCCATTTGCCACACTTGTGGTGAGCCAGTCGGGGTTGATGGCAATGGCCAGCTTTTCGTTGCTTGCCATGAGTGCCATTTTCCTATTTGTAAAGTCTGTGTTCAGTATGATATTAAGGAAGGCCGAAATGTTTGCTTGCGGTGTGGTTCTCCATTTGATGAGAACTTGCTGATGGATGCTGATACAAAGAGATCAGGAGATCGAAACACTATGGCATCTCATCTCAGTCATTCTCAGGACGTTGGTGTTCATGCTAGACATGTCAGTAGTGTGTCGACAGTGGATAGTGAATTGAATGATGAATCTGGGAACCCTATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAATAAAAAGAAACGGCCTGCCGTGAAGACTGAACAGGAAGCTCAAATTCCCGTCCATCAACAAATGGAAGAGAAACAGATTTCAGAGGAGGCTGCGGTTACACACTCATTTTCTTCAGTTTATCCAATTCCTTCCAGCAGATTAACACCATACAGAATCGTGATAATCATGCGATTGATCATTCTAGCTCTTTTCTTTCAGTATCGAATTACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTTTCCCGTCTGCAGAGACACATTCATTGACAGATTATCGGCCAGGTTTGAAAGAGAGGGAGAACCTTCTCAGCTTGCCGCTGTGGATTTTTTTGTGAGTACTGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCGATCCTTGCTGTGGACTATCCTGTCGATAAAGTTTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTTACATTTGAATCTCTAGTTGAAACAGCCGACTTTGCAAGAATGTGGGTTCCTTTCTGCAAGAAATTCTCCATTGAACCTCGAGCTCCTGAGTTTTACTTCTCCCAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGCAGAGCAATGAAATATATCATTTACTATGTCAATGGTTGGAAACAAATATTTAACAATCAGTCTGCTGATTTGTGGCAGAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCAAAGGCTCAGAAAACGCCAGATGAAGGCTGGTCCATGCAAGATGGAACAACTTGGCCAGGAAATAATCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACAGGCGCCCATGACGTAGAGGGTAATGAACTTCCTCGACTAGTCTATGTCTCTAGAGAGAAGAGGCCTGGTTACCAACATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTGAGAGTATCTGCAGTCCTCACAAACGCCCCCTACATTCTCAACCTTGATTGTGATCATTATGTTAACAATAGCCAGGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCAGAGATGTATGCTATGTTCAATTTCCTCAGAGGTTCGATGGCATTGATCGAAGTGATCGATATGCCAATCGCAACACTGTTTTCTTTGATGTGAACATGAAAGGATTGGATGGGATCCAGGGACCAGTATACGTGGGTACAGGTTGTGTTTTCAATAGACAGGCTCTTTATGGCTACGGACCTCCTACACTGCCTAGCTTATCGAAGAAATCATCATCATCATCCTGCTCCTGGTGTGGCTGCTGCTCGTGCTGCTGTCCTTCCAAGAAGATTTCAAAAGATCCGACTGAGATTCAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCGGGGAAATAGATAATTATGATGAGTACGAGAGGTCAATGCTAATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCTTATCTTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAATCCATCGACTTTGATCAAAGAAGCAATTCATGTCATTGGCTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATACGGTTCGGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCATGAGGCCAGCATTCAAAGGATCAGCCCCGATTAACCTTTCCGATCGTCTGCACCAAGTTCTTCGATGGGCACTCGGATCTGTTGAGATTTTTCTCAGTAGACATTGTCCATTATGGTATGGATTCGCAGGCGGACGACTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCGTTCACTTCCCTCCCTCTCGTTGCCTACTGCTCGTTGCCTGCAATCTGCCTGTTGACAGGGAAATTCATCATACCAACGCTCTCAAACCTAGCAAGTACCCTTTTTCTCGGTCTCTTCCTGTCCATCATTCTCACAAGTGTTCTTGAGCTGCGTTGGAGTGGTGTTAGCATTGAAGATATATGGCGTAACGAACAATTTTGGGTCATAGGAGGCGTCTCAGCCCATCTCTTTGCTGTCTTCCAAGGGTTCCTAAAGATGTTGGCCGGCATTGACACCAACTTCACAGTTACTGCAAAGGCAGCTGACGACGCTGAGTTCGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACTCTTATTGTCGTTAACATGGTTGGTGTCGTTGCTGGATTTTCTGACGCATTAAATGGTGGATATGAAGCTTGGGGACCTCTTTTTGGCAAGGTCTTCTTTGCCTTCTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACAGGACGCCTACCATTGTTGTTTTATGGTCAGTACTGTTGGCATCAGTTTTCTCACTTGTTTGGGTGAAGATTAACCCATTTGTGAACCAAGTTGACAGTACAACCGTTGCACAGAGCTGCATTGCAATAGATTGTTGA 3018 43.9 MVSDVPICHTCGEPVGVDGNGQLFVACHECHFPICKVCVQYDIKEGRNVCLRCGSPFDENLLMDADTKRSGDRNTMASHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPAVKTEQEAQIPVHQQMEEKQISEEAAVTHSFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWFPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARMWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKYIIYYVNGWKQIFNNQSADLWQRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTTWPGNNPRDHPGMIQVFLGNTGAHDVEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPTLPSLSKKSSSSSCSWCGCCSCCCPSKKISKDPTEIQRDAKREELDAAIFNLGEIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVIGCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPMRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGIDTNFTVTAKAADDAEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDSTTVAQSCIAIDC* 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 618907 625290 + Chy12G206680.1 Chy12g00068 237849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00068 1005 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 423 568 IPR029044 -
Chy12g00068 1005 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 574 603 IPR017896 -
Chy12g00068 1005 Pfam Zinc-binding RING-finger 6 57 IPR027934 -
Chy12g00068 1005 SUPERFAMILY Nucleotide-diphospho-sugar transferases 438 798 IPR029044 -
Chy12g00068 1005 MobiDBLite consensus disorder prediction 121 143 - -
Chy12g00068 1005 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 2 1005 - -
Chy12g00068 1005 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 1005 - -
Chy12g00068 1005 Pfam Cellulose synthase 254 995 IPR005150 GO:0016020|GO:0016760|GO:0030244
Chy12g00068 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 79 IPR013083 -
Chy12g00068 1005 SUPERFAMILY RING/U-box 4 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01862 Chy-Chr11:24856924 Chy12g00068 Chy-Chr12:618907 0 dispersed
Chy12g00068 Chy-Chr12:618907 Chy11g00502 Chy-Chr11:5412525 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00068 K10999 - csv:101208988 1957.57