Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00083 ATGGAGAAAAAGGGAAGCATTTTAATGCAAAGATACGAGCTTGGTAGAATGCTTGGACAAGGCACATTTGCTAAAGTCTACCATGCTCGTAATCTCAAGTCTGGCCAGAGTGTAGCTATTAAAATCATTGACAAAGAGAAAGTTCTACGCGTTGGGTTGATCGACCAAATCAAAAGGGAAATCTCTGTGATGCGGCTTGTTCGTCATCCTAATGTGGTGCAGCTTTATGAGGTTATGGCTAGCCGGACCAAAATCTATTTTGCTATGGAGTATGTTAAAGGTGGGGAGCTTTTCAATAAAGTGGCTAAAGGAAAGCTTAAGGAAGATGCTGCTCGTAAGTATTTTCAACAGCTTATAGGTGCTGTTGATTATTGCCATAGTCGTGGTGTGTATCATAGAGATATTAAACCTGAAAATCTCCTTCTTGATGAGTATGGGAATCTTAAGATTTCGGATTTTGGGTTGAGTGCTTTGGCTGAATCTAGAAGACAAGATGGGCTTCTTCATACAACTTGTGGTACCCCTGCTTATGTTGCCCCTGAAGTCATCAACAAGAAAGGTTATGACGGTGCTAAAGCTGATATTTGGTCATCTGGGGTTGTCCTGTTCGTTCTTCTTGCTGGCTATCTCCCTTTCCACGATCCAAATCTGATGGAAATGTACAGAAAAATCTCAAGAGGAGAATTCAAATGCCCTCAATGGTTTCCCCCAGAAGTTCGAAAGCTTCTCTCAAGAATCCTAGACCCAAGTCCTTACACCAGAATAAACATGGCCAAACTCATGGAAAATTCCTGGTTCAAGAAAGGTTTCAAAGCAAACGTAACCACTCCAAAACAACTTCAAAGCAACGAAGACATGTCGTCTGTGAGCGACGTTAATTCCGCTTTCAACGACATTAGTTCGGAAGGAGGAAGCTCTGTTAGCAACACCAATGAGAGTGGAAGGCCACCAACAGCTACTAGAGCTCCAATAAGAAATAATTCCTTCAATGCATTTGACATCATATCTCTCTCACCAGGCTTTGATCTCTCAGGTCTATTTGAGAATGATGGGAATGAAAGACTACAGTCTCGTTTCACAACGACGAAACCAGCTTCAGCTATCGTGTCGAAGTTCGAAGAGATAGCAGAAATGGAAAGGTTTAAGGTGATGAAAAAAGATGGGATTGTGAAACTACAAGGGAGCAAACAGGGGAGGAAAGGACAACTGGCTATAGATGCTGAGATATTTGAGGTAACGCCTTCTTTTTTTGTGGTGGAAGTGAAGAAAACTGCTGGAGATACATTGGAATATAGGCAGTTTTATGACAAAGATATGAGACCTTGCCTTAAAGATATTGTATGGACTTGGGAAGGAAATGAGCAGCAGCAGCAACAGCAACCACAAATTGTTTAG 1395 41.72 MEKKGSILMQRYELGRMLGQGTFAKVYHARNLKSGQSVAIKIIDKEKVLRVGLIDQIKREISVMRLVRHPNVVQLYEVMASRTKIYFAMEYVKGGELFNKVAKGKLKEDAARKYFQQLIGAVDYCHSRGVYHRDIKPENLLLDEYGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKADIWSSGVVLFVLLAGYLPFHDPNLMEMYRKISRGEFKCPQWFPPEVRKLLSRILDPSPYTRINMAKLMENSWFKKGFKANVTTPKQLQSNEDMSSVSDVNSAFNDISSEGGSSVSNTNESGRPPTATRAPIRNNSFNAFDIISLSPGFDLSGLFENDGNERLQSRFTTTKPASAIVSKFEEIAEMERFKVMKKDGIVKLQGSKQGRKGQLAIDAEIFEVTPSFFVVEVKKTAGDTLEYRQFYDKDMRPCLKDIVWTWEGNEQQQQQQPQIV* 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 837203 839072 - Chy12G206830.1 Chy12g00083 237864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00083 464 Gene3D Transferase(Phosphotransferase) domain 1 3 316 - -
Chy12g00083 464 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Chy12g00083 464 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00083 464 Gene3D Kinase associated domain 1, KA1 325 449 - -
Chy12g00083 464 CDD CIPK_C 330 444 - -
Chy12g00083 464 SUPERFAMILY Protein kinase-like (PK-like) 8 326 IPR011009 -
Chy12g00083 464 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00083 464 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00083 464 PANTHER - 2 460 - -
Chy12g00083 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Chy12g00083 464 ProSiteProfiles NAF domain profile. 324 348 IPR018451 GO:0007165
Chy12g00083 464 CDD STKc_SnRK3 11 265 - -
Chy12g00083 464 MobiDBLite consensus disorder prediction 300 324 - -
Chy12g00083 464 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 20 2 460 - -
Chy12g00083 464 Pfam NAF domain 327 385 IPR004041 GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02108 Chy-Chr2:25413498 Chy12g00083 Chy-Chr12:837203 0 dispersed
Chy05g01236 Chy-Chr5:16762980 Chy12g00083 Chy-Chr12:837203 0 dispersed
Chy06g00062 Chy-Chr6:425939 Chy12g00083 Chy-Chr12:837203 1.47E-167 dispersed
Chy11g01389 Chy-Chr11:20296741 Chy12g00083 Chy-Chr12:837203 0 dispersed
Chy12g00083 Chy-Chr12:837203 Chy12g00355 Chy-Chr12:3797110 1.24E-173 dispersed
Chy12g00083 Chy-Chr12:837203 Chy02g00224 Chy-Chr2:1500044 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71601 PF00069 Pkinase 1.70E-72 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00083 K07198 - csv:101206082 884.019