Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00096 ATGGATACAAAATTTTGTTACTTCAATAATTACAATGTTAATCAGCCTAGGCATTTCTGTAAGGGCTGCCAGAGGTATTGGACTGCCGGCGGGGCCCTTCGCAACGTTCCCATCGGAGCCGGCCGTCGTAAAACCAAGCCTCCTTGTCGAACCTTTGGTGGGTTGCCGGAGAATTGTGTCTTTGATTCTTCAGGGATTAATGTCACGGTTCAACCGTTTGAGTTGGAAGGGATGGTCGAGAAGTGGCATGTCGTCGCTGCCGCCGCCACGCAAGGTGGTATTCGGCAAATTTTACCGGATCAAGAAGTCGACATGTTGTGA 321 49.84 MDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKTKPPCRTFGGLPENCVFDSSGINVTVQPFELEGMVEKWHVVAAAATQGGIRQILPDQEVDML* 107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1011289 1012838 + Chy12G206960.1 Chy12g00096 237877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00096 106 Pfam Dof domain, zinc finger 1 46 IPR003851 GO:0003677|GO:0006355
Chy12g00096 106 ProSiteProfiles Zinc finger Dof-type profile. 1 47 IPR003851 GO:0003677|GO:0006355
Chy12g00096 106 PANTHER CYCLIC DOF FACTOR 2 1 100 IPR045174 GO:0003700|GO:0006355
Chy12g00096 106 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 1 100 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00228 Chy12g00096 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00096 Chy-Chr12:1011289 Chy04g01555 Chy-Chr4:22154932 3.41E-26 dispersed
Chy12g00096 Chy-Chr12:1011289 Chy02g00228 Chy-Chr2:1544177 2.43E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18815 PF02701 zf-Dof 4.00E-26 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00096 - - csv:101204978 216.468