Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00122 ATGGTTGCGGTTAAGAAGATTGCTAACGCGTTTGATAACCATATGGATGCGAAGAGGACGCTCCGTGAGATTAAGCTTCTACGCCATTTGGATCATGAAAATGTAATAGGCATAAGAGATGTGATTCCTCCACCTTTACGGAGAGAATTCAATGATGTCTACATTTCGACTGAACTAATGGATACTGATCTTCACCAAATAATCCGCTCCAACCAAAGTTTATCAGAAGAGCATTGTCAGTATTTCCTTTATCAGATTCTCAGAGGACTGAAATACATACATTCGGCAAATGTCATTCATCGAGACTTGAAACCGAGCAATCTATTGCTTAATGCAAACTGTGATCTTAAAATATGTGACTTTGGTCTTGCTCGACCAACTTCTGAAAATGAATGTATGACGGAATATGTTGTGACAAGATGGTACAGAGCACCTGAGCTTCTTTTGAACTCTGATTATACAGCTGCAATCGATATATGGTCTGTTGGTTGCATCTTTCTGGAGCTTATGAATAGAAGGCCTTTATTTCCAGGCAGGGATCATGTGCATCAGATGAGATTATTGACTGAGCTTCTTGGCACACCAAGCGAGTCAGATCTTGGTTTTATCCGAAATGAAGACTCGAAAAGATATCTTCGACAGCTACCTCCACATCCTCGTCAGCCATTAGCAACGGTTTTTCCACATGTTCATCCGTTAGCAATTGATCTTGTGGATAAAATGTTGACATTTGACCCAACAAAGAGAATTACCGTTGAAGAAGCGTTAGCACATCCATACCTAGAAAGATTGCATGACATAGCCGATGAGCCGGTTTGCTCAGAGCCATTCTCGTTTGAGTTTGAGCAACAATACTTAGACGAAGAACAGATGAAGGAGATGATTTACAGAGAATCATTGGCACTCAATCCAGAATTTGCATGA 924 40.58 MVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGIRDVIPPPLRREFNDVYISTELMDTDLHQIIRSNQSLSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENECMTEYVVTRWYRAPELLLNSDYTAAIDIWSVGCIFLELMNRRPLFPGRDHVHQMRLLTELLGTPSESDLGFIRNEDSKRYLRQLPPHPRQPLATVFPHVHPLAIDLVDKMLTFDPTKRITVEEALAHPYLERLHDIADEPVCSEPFSFEFEQQYLDEEQMKEMIYRESLALNPEFA* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1329932 1332968 + Chy12G207220.1 Chy12g00122 237903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00122 307 Pfam Protein kinase domain 2 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00122 307 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 306 - -
Chy12g00122 307 Gene3D Transferase(Phosphotransferase) domain 1 60 288 - -
Chy12g00122 307 ProSitePatterns Serine/Threonine protein kinases active-site signature. 98 110 IPR008271 GO:0004672|GO:0006468
Chy12g00122 307 SUPERFAMILY Protein kinase-like (PK-like) 1 268 IPR011009 -
Chy12g00122 307 SMART serkin_6 1 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g00122 307 ProSitePatterns MAP kinase signature. 11 114 IPR003527 GO:0004707|GO:0005524|GO:0006468
Chy12g00122 307 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 306 - -
Chy12g00122 307 Gene3D Phosphorylase Kinase; domain 1 2 298 - -
Chy12g00122 307 ProSiteProfiles Protein kinase domain profile. 1 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01662 Chy-Chr11:23088308 Chy12g00122 Chy-Chr12:1329932 8.75E-162 dispersed
Chy12g00122 Chy-Chr12:1329932 Chy12g00894 Chy-Chr12:14319652 8.94E-151 dispersed
Chy12g00122 Chy-Chr12:1329932 Chy09g01256 Chy-Chr9:14581312 1.46E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71603 PF00069 Pkinase 8.00E-67 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00122 K20536 - csv:101202796 619.002