Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00180 ATGGCGAAAACCCTTATTTCATCCTCACCTTTCGTCGGTTCTTCTCTCCCATCCCTTTCTCACCATCTTCCTCTCCATACTCTTCCCCACCGGAGACACCTCACCACCAGAGTTAATTTCAGCTTCCATCAACTTCCCCCTATCCATACCTTTCATTCTTCCCTCGATTTTCAAGCAATTGTTAGCAGAGCCGAAGGCCTGCTCTATACACTTGCTGACGCTGCCGTTGCAGTGGATTCCACTGTTTCAGGTGCCGCTACTTCCACTTCTCCTGATACTGCGGTGCAGAAGAATGGTGGATGGTTTGGATTTATCTCCGATGCCATGGAAGTGGTTCTTAAAGTATTGAAGGGTGGCCTTGAGGCTGTGCACGTCCCGTATTCATATGGATTTGCAATTATTTTACTTACTATTATCGTTAAAGTTGCAACTTTTCCTCTAACTAAGCAGCAGGTTGAGTCAACATTGGCTATGCAGAATCTTCAACCGAAGATTAAAGCTATCCAACAAAGATATGCAGGCAATCAGGAAAGAATACAACTTGAGACATCACGGCTTTATAGGCAAGCAGGAGTTAACCCTTTGGCAGGCTGTTTCCCAACTTTAGCCACCATACCTGTTTGGATTGGCCTATATCAAGCTCTTTCTAATGTGGCAAATGAGGGATTACTGACTGAAGGTTTCTTTTGGATTCCTTCTCTTGGTGGACCAACTACTATTGCTGCTCGACAAAGTGGAGCTGGAATCTCTTGGTTGTTGCCTTTTGTGGATGGCCATCCACCATTGGGCTGGTCTGACACTGCGGCATACCTTGTATTACCTGTTCTCCTTGTCATATCTCAGTATGTATCGATGGAACTCATGAAGCCTCCCCAGACTGATGATCCAACACAAAAGAACACACTTCTTATTTTCAAGTTTCTTCCCCTCATGATCGGTTACTTCTCATTGTCTGTTCCGTCTGGATTATCAATTTACTGGTTCACAAACAATGTTCTTAGCACGGCTCAGCAAGTATGGTTACGCAAATTAGGAGGTGCAAAGCCTGTTGTAAATGAGAATGCTCCTGGAATCATAACAGCTGGACGTGCCAAACGAACGCCTGAATCAGAAAGAACGGGTGACAGGTTTAGGCAAGTAAGGGAAGATGAGAAGAAGACTAAGTTAAGCAAGGCAGCTCGATCAGAAGATATTCAAACTTTGGCTTCTGAGTCCGATACTGAGGATGGGTATGATGGGGAGACAACTGAGAAGGGTGAGGACGGTCTAGAAGAGGCATATGCATCAAGTGCAGACAAAGACGTCCCAACCTATAATCGACAAAAGAGAAGCAAGCGATCAAAGAGGAAACGTGCAGTCTGA 1362 45.08 MAKTLISSSPFVGSSLPSLSHHLPLHTLPHRRHLTTRVNFSFHQLPPIHTFHSSLDFQAIVSRAEGLLYTLADAAVAVDSTVSGAATSTSPDTAVQKNGGWFGFISDAMEVVLKVLKGGLEAVHVPYSYGFAIILLTIIVKVATFPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGGPTTIAARQSGAGISWLLPFVDGHPPLGWSDTAAYLVLPVLLVISQYVSMELMKPPQTDDPTQKNTLLIFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVNENAPGIITAGRAKRTPESERTGDRFRQVREDEKKTKLSKAARSEDIQTLASESDTEDGYDGETTEKGEDGLEEAYASSADKDVPTYNRQKRSKRSKRKRAV* 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2175838 2181337 - Chy12G207800.1 Chy12g00180 237961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00180 453 Pfam 60Kd inner membrane protein 129 343 IPR001708 GO:0016021|GO:0032977
Chy12g00180 453 PANTHER OXA1 1 447 IPR001708 GO:0016021|GO:0032977
Chy12g00180 453 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 128 342 IPR028055 -
Chy12g00180 453 PANTHER INNER MEMBRANE PROTEIN ALBINO3, CHLOROPLASTIC 1 447 - -
Chy12g00180 453 MobiDBLite consensus disorder prediction 358 453 - -
Chy12g00180 453 MobiDBLite consensus disorder prediction 365 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01693 Chy-Chr3:18576980 Chy12g00180 Chy-Chr12:2175838 3.38E-152 dispersed
Chy07g01154 Chy-Chr7:16434693 Chy12g00180 Chy-Chr12:2175838 2.07E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00180 K03217 - csv:101217620 811.216