Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy12g00185 | ATGGAGGAAGATAACAGTGGTCTTCTTATTCAGAGTTTGATCGATGCTGTTAATGAAATTGCTTGGATCTCGGATTTTAGGTATACTGTTAAGAAACAGTATAGTAATTTGTCTAGGAGATTGAAGCTTTTGATTCCAATGTTTGAAGAGATTAGAGATGGTAAAGACCGTATTACTGAAGATACTCTTAAGGCTCTTGTTTTGTTGAAAGAAGCTCTTGAATCTGCTAAGAAGTTGCTCAGATTTGGCAGCGAAGGGAGTAAGATTTTCTTGGCTGTAGAGAGGGAGCAAATAATGAATAAATTTCACGAGGTAACTGCTCAGTTGGAACAAGCGTTGGAAGGAATAGCCTATGATAAACTAGATATATCCGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTTGCTCAATTCAGAAGGGCCAGAGGCAGGGCCGAAGCTCCTGACTCTGAGCTGTCGGAAGATATCCTTGCCCTTAACAATATGAGCAATGATTCTTCCATAGATCAAGACCGCCTGAGGAGACTGTCCGAAAAATTACAGTTGATAGGAATATCCGATCTTACACAAGAATCAATAGCTTTGCATGAGATGGTTGCTGCTACTGATGGTGATCCAGGTCAAAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTATGTGCAAACGGAGAACCTCGAAACGGACGATCCTAGTAGAGAAAAGAGTCCTCCAGCAAGTTGTAGTGGACATGTATCCAATGATAAAAATAACAAGACCCCAATTATACCAGATGATTTTCGCTGCCCAATTTCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGGAGCAGGGCATGGGACATGTCCAAAGACACAACAGAACCTCTCAAGCACTACTCTTACCCCGAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGTGAGGCCAACGGTATTGAACCACCAAAACGACCCAACAGCGCTCGACCATGTAGAAGCTCGTCATCTTGCTCAGCTGCTGAACGCACAAAAATTGATATTCTTCTTTGCAAACTCGCTTCTGGAAATCCGGAAGATCAACGATCTGCAGCCGGTGAGATTCGACTACTTGCAAAACGAAATGCAGATAATCGTGTTGCTATTGCTGAGGCTGGTGCTATTCCTCTCCTTGTTGGCCTTCTTTCAACTCCGGACTCCCGTGTTCAAGAGCATGCTGTGACAGCACTTCTTAACCTCTCTATATGTGAGGACAACAAGGGAAGCATCATTTCATCTGGGGCAGTTCCTGGTATCGTTCTCGTGCTAAAAAAGGGAAGCATGGAAGCACGGGAAAATGCAGCAGCCACTCTTTTCAGCCTTTCGGTTATCGATGAAAACAAAGTTAGAATTGGCGCCTCCGGAGCTATCCCACCTCTCGTTACACTGCTTAGTGAAGGCACACAAAGAGGTAAGAAAGATGCTGCAACTGCACTTTTCAACTTATGCATCTACCAAGGAAACAAAGGAAGGGCAGTAAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACCGAGCCCGGAACCGGAATGGTAGATGAAGCCTTAGCTATCTTAGCTATACTCGCTAGCCACTCCGAAGGGAAAGGTGCCATCAGATCTGCAAAGGCAGTGCCAGTTTTGGTAGATGTGATTGGGACAGGATCCCCCAGGAACAGAGAAAATGCGGCTGCAGTTCTCGTGCACCTCTGCTCGGGAGACGAGCAACTCCTAGTAGAGGCCAGAGAACTTGGAGTGATTAGTTCATTGATAGATTTGGCACGCAATGGCACAGATAGAGGAAAGCGAAAAGCTTCACAGTTGCTTGAACGAATAAACCGACTGTTTGAGCATGCAGCAGCAAATCTGGAAGAGGTTCGGGTGCTTCGGTTGCAAGCGTCGGAATCTCAACCTCAAAGCCAGCCATCACAATCAACCTCAACAACGGAAGTCGTTGGTAGCTGA | 2019 | 45.32 | MEEDNSGLLIQSLIDAVNEIAWISDFRYTVKKQYSNLSRRLKLLIPMFEEIRDGKDRITEDTLKALVLLKEALESAKKLLRFGSEGSKIFLAVEREQIMNKFHEVTAQLEQALEGIAYDKLDISDEVKEQVELVLAQFRRARGRAEAPDSELSEDILALNNMSNDSSIDQDRLRRLSEKLQLIGISDLTQESIALHEMVAATDGDPGQSIEKMAGLLKKIKDYVQTENLETDDPSREKSPPASCSGHVSNDKNNKTPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLGAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPNSARPCRSSSSCSAAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVIDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGRAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHSEGKGAIRSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQLLVEARELGVISSLIDLARNGTDRGKRKASQLLERINRLFEHAAANLEEVRVLRLQASESQPQSQPSQSTSTTEVVGS* | 673 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2245357 | 2249527 | - | Chy12G207850.1 | Chy12g00185 | 237966 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy12g00185 | 672 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 397 | 439 | IPR000225 | GO:0005515 | |
Chy12g00185 | 672 | MobiDBLite | consensus disorder prediction | 242 | 256 | - | - | |
Chy12g00185 | 672 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 259 | 332 | IPR013083 | - | |
Chy12g00185 | 672 | MobiDBLite | consensus disorder prediction | 650 | 672 | - | - | |
Chy12g00185 | 672 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 520 | 562 | IPR000225 | GO:0005515 | |
Chy12g00185 | 672 | PANTHER | U BOX DOMAIN-CONTAINING | 7 | 647 | - | - | |
Chy12g00185 | 672 | CDD | RING-Ubox_PUB | 263 | 305 | IPR045210 | - | |
Chy12g00185 | 672 | MobiDBLite | consensus disorder prediction | 228 | 257 | - | - | |
Chy12g00185 | 672 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 7 | 647 | - | - | |
Chy12g00185 | 672 | SUPERFAMILY | ARM repeat | 357 | 630 | IPR016024 | - | |
Chy12g00185 | 672 | SMART | arm_5 | 509 | 549 | IPR000225 | GO:0005515 | |
Chy12g00185 | 672 | SMART | arm_5 | 592 | 632 | IPR000225 | GO:0005515 | |
Chy12g00185 | 672 | SMART | arm_5 | 550 | 590 | IPR000225 | GO:0005515 | |
Chy12g00185 | 672 | SMART | arm_5 | 427 | 467 | IPR000225 | GO:0005515 | |
Chy12g00185 | 672 | SMART | arm_5 | 386 | 426 | IPR000225 | GO:0005515 | |
Chy12g00185 | 672 | SMART | arm_5 | 468 | 508 | IPR000225 | GO:0005515 | |
Chy12g00185 | 672 | Pfam | Armadillo/beta-catenin-like repeat | 469 | 507 | IPR000225 | GO:0005515 | |
Chy12g00185 | 672 | Pfam | Armadillo/beta-catenin-like repeat | 551 | 590 | IPR000225 | GO:0005515 | |
Chy12g00185 | 672 | Pfam | Armadillo/beta-catenin-like repeat | 386 | 425 | IPR000225 | GO:0005515 | |
Chy12g00185 | 672 | Gene3D | - | 336 | 494 | IPR011989 | - | |
Chy12g00185 | 672 | Gene3D | - | 495 | 657 | IPR011989 | - | |
Chy12g00185 | 672 | Gene3D | - | 9 | 118 | IPR036537 | GO:0007166 | |
Chy12g00185 | 672 | SMART | Ubox_2 | 262 | 325 | IPR003613 | GO:0004842|GO:0016567 | |
Chy12g00185 | 672 | Pfam | U-box domain | 259 | 329 | IPR003613 | GO:0004842|GO:0016567 | |
Chy12g00185 | 672 | SUPERFAMILY | RING/U-box | 254 | 335 | - | - | |
Chy12g00185 | 672 | ProSiteProfiles | U-box domain profile. | 258 | 332 | IPR003613 | GO:0004842|GO:0016567 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Chy11g01242 | Chy12g00185 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy03g01088 | Chy-Chr3:14283989 | Chy12g00185 | Chy-Chr12:2245357 | 3.88E-27 | dispersed | |
Chy03g01664 | Chy-Chr3:18421852 | Chy12g00185 | Chy-Chr12:2245357 | 2.44E-52 | dispersed | |
Chy12g00056 | Chy-Chr12:498638 | Chy12g00185 | Chy-Chr12:2245357 | 1.50E-96 | dispersed | |
Chy12g00185 | Chy-Chr12:2245357 | Chy12g01281 | Chy-Chr12:17336515 | 4.61E-87 | dispersed | |
Chy02g00356 | Chy-Chr2:2295256 | Chy12g00185 | Chy-Chr12:2245357 | 1.62E-60 | transposed | |
Chy02g00450 | Chy-Chr2:2836400 | Chy12g00185 | Chy-Chr12:2245357 | 3.70E-07 | transposed | |
Chy02g01845 | Chy-Chr2:20755798 | Chy12g00185 | Chy-Chr12:2245357 | 3.90E-17 | transposed | |
Chy03g00196 | Chy-Chr3:1826834 | Chy12g00185 | Chy-Chr12:2245357 | 5.24E-126 | transposed | |
Chy03g00609 | Chy-Chr3:8656921 | Chy12g00185 | Chy-Chr12:2245357 | 1.50E-18 | transposed | |
Chy03g00861 | Chy-Chr3:11831154 | Chy12g00185 | Chy-Chr12:2245357 | 1.36E-32 | transposed | |
Chy03g01589 | Chy-Chr3:17917046 | Chy12g00185 | Chy-Chr12:2245357 | 9.59E-67 | transposed | |
Chy04g00146 | Chy-Chr4:1320304 | Chy12g00185 | Chy-Chr12:2245357 | 1.92E-09 | transposed | |
Chy04g00352 | Chy-Chr4:3125441 | Chy12g00185 | Chy-Chr12:2245357 | 4.03E-17 | transposed | |
Chy04g00411 | Chy-Chr4:3669453 | Chy12g00185 | Chy-Chr12:2245357 | 2.64E-15 | transposed | |
Chy04g00817 | Chy-Chr4:10644899 | Chy12g00185 | Chy-Chr12:2245357 | 2.07E-87 | transposed | |
Chy05g00730 | Chy-Chr5:9934829 | Chy12g00185 | Chy-Chr12:2245357 | 1.56E-61 | transposed | |
Chy06g00053 | Chy-Chr6:379928 | Chy12g00185 | Chy-Chr12:2245357 | 1.65E-13 | transposed | |
Chy07g00624 | Chy-Chr7:5781457 | Chy12g00185 | Chy-Chr12:2245357 | 9.84E-06 | transposed | |
Chy09g00867 | Chy-Chr9:11403672 | Chy12g00185 | Chy-Chr12:2245357 | 2.25E-132 | transposed | |
Chy10g01080 | Chy-Chr10:15896281 | Chy12g00185 | Chy-Chr12:2245357 | 2.39E-15 | transposed | |
Chy10g01301 | Chy-Chr10:17453715 | Chy12g00185 | Chy-Chr12:2245357 | 0 | transposed | |
Chy11g00210 | Chy-Chr11:1971633 | Chy12g00185 | Chy-Chr12:2245357 | 8.07E-09 | transposed | |
Chy11g00773 | Chy-Chr11:10806676 | Chy12g00185 | Chy-Chr12:2245357 | 1.49E-168 | transposed | |
Chy11g01547 | Chy-Chr11:22018713 | Chy12g00185 | Chy-Chr12:2245357 | 3.59E-09 | transposed | |
Chy11g01242 | Chy-Chr11:18538898 | Chy12g00185 | Chy-Chr12:2245357 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy12g00185 | - | - | csv:101218572 | 1192.95 |