Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00185 ATGGAGGAAGATAACAGTGGTCTTCTTATTCAGAGTTTGATCGATGCTGTTAATGAAATTGCTTGGATCTCGGATTTTAGGTATACTGTTAAGAAACAGTATAGTAATTTGTCTAGGAGATTGAAGCTTTTGATTCCAATGTTTGAAGAGATTAGAGATGGTAAAGACCGTATTACTGAAGATACTCTTAAGGCTCTTGTTTTGTTGAAAGAAGCTCTTGAATCTGCTAAGAAGTTGCTCAGATTTGGCAGCGAAGGGAGTAAGATTTTCTTGGCTGTAGAGAGGGAGCAAATAATGAATAAATTTCACGAGGTAACTGCTCAGTTGGAACAAGCGTTGGAAGGAATAGCCTATGATAAACTAGATATATCCGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTTGCTCAATTCAGAAGGGCCAGAGGCAGGGCCGAAGCTCCTGACTCTGAGCTGTCGGAAGATATCCTTGCCCTTAACAATATGAGCAATGATTCTTCCATAGATCAAGACCGCCTGAGGAGACTGTCCGAAAAATTACAGTTGATAGGAATATCCGATCTTACACAAGAATCAATAGCTTTGCATGAGATGGTTGCTGCTACTGATGGTGATCCAGGTCAAAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTATGTGCAAACGGAGAACCTCGAAACGGACGATCCTAGTAGAGAAAAGAGTCCTCCAGCAAGTTGTAGTGGACATGTATCCAATGATAAAAATAACAAGACCCCAATTATACCAGATGATTTTCGCTGCCCAATTTCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGGAGCAGGGCATGGGACATGTCCAAAGACACAACAGAACCTCTCAAGCACTACTCTTACCCCGAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGTGAGGCCAACGGTATTGAACCACCAAAACGACCCAACAGCGCTCGACCATGTAGAAGCTCGTCATCTTGCTCAGCTGCTGAACGCACAAAAATTGATATTCTTCTTTGCAAACTCGCTTCTGGAAATCCGGAAGATCAACGATCTGCAGCCGGTGAGATTCGACTACTTGCAAAACGAAATGCAGATAATCGTGTTGCTATTGCTGAGGCTGGTGCTATTCCTCTCCTTGTTGGCCTTCTTTCAACTCCGGACTCCCGTGTTCAAGAGCATGCTGTGACAGCACTTCTTAACCTCTCTATATGTGAGGACAACAAGGGAAGCATCATTTCATCTGGGGCAGTTCCTGGTATCGTTCTCGTGCTAAAAAAGGGAAGCATGGAAGCACGGGAAAATGCAGCAGCCACTCTTTTCAGCCTTTCGGTTATCGATGAAAACAAAGTTAGAATTGGCGCCTCCGGAGCTATCCCACCTCTCGTTACACTGCTTAGTGAAGGCACACAAAGAGGTAAGAAAGATGCTGCAACTGCACTTTTCAACTTATGCATCTACCAAGGAAACAAAGGAAGGGCAGTAAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACCGAGCCCGGAACCGGAATGGTAGATGAAGCCTTAGCTATCTTAGCTATACTCGCTAGCCACTCCGAAGGGAAAGGTGCCATCAGATCTGCAAAGGCAGTGCCAGTTTTGGTAGATGTGATTGGGACAGGATCCCCCAGGAACAGAGAAAATGCGGCTGCAGTTCTCGTGCACCTCTGCTCGGGAGACGAGCAACTCCTAGTAGAGGCCAGAGAACTTGGAGTGATTAGTTCATTGATAGATTTGGCACGCAATGGCACAGATAGAGGAAAGCGAAAAGCTTCACAGTTGCTTGAACGAATAAACCGACTGTTTGAGCATGCAGCAGCAAATCTGGAAGAGGTTCGGGTGCTTCGGTTGCAAGCGTCGGAATCTCAACCTCAAAGCCAGCCATCACAATCAACCTCAACAACGGAAGTCGTTGGTAGCTGA 2019 45.32 MEEDNSGLLIQSLIDAVNEIAWISDFRYTVKKQYSNLSRRLKLLIPMFEEIRDGKDRITEDTLKALVLLKEALESAKKLLRFGSEGSKIFLAVEREQIMNKFHEVTAQLEQALEGIAYDKLDISDEVKEQVELVLAQFRRARGRAEAPDSELSEDILALNNMSNDSSIDQDRLRRLSEKLQLIGISDLTQESIALHEMVAATDGDPGQSIEKMAGLLKKIKDYVQTENLETDDPSREKSPPASCSGHVSNDKNNKTPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLGAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPNSARPCRSSSSCSAAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVIDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGRAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHSEGKGAIRSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQLLVEARELGVISSLIDLARNGTDRGKRKASQLLERINRLFEHAAANLEEVRVLRLQASESQPQSQPSQSTSTTEVVGS* 673
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 2245357 2249527 - Chy12G207850.1 Chy12g00185 237966
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00185 672 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 397 439 IPR000225 GO:0005515
Chy12g00185 672 MobiDBLite consensus disorder prediction 242 256 - -
Chy12g00185 672 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 332 IPR013083 -
Chy12g00185 672 MobiDBLite consensus disorder prediction 650 672 - -
Chy12g00185 672 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Chy12g00185 672 PANTHER U BOX DOMAIN-CONTAINING 7 647 - -
Chy12g00185 672 CDD RING-Ubox_PUB 263 305 IPR045210 -
Chy12g00185 672 MobiDBLite consensus disorder prediction 228 257 - -
Chy12g00185 672 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 647 - -
Chy12g00185 672 SUPERFAMILY ARM repeat 357 630 IPR016024 -
Chy12g00185 672 SMART arm_5 509 549 IPR000225 GO:0005515
Chy12g00185 672 SMART arm_5 592 632 IPR000225 GO:0005515
Chy12g00185 672 SMART arm_5 550 590 IPR000225 GO:0005515
Chy12g00185 672 SMART arm_5 427 467 IPR000225 GO:0005515
Chy12g00185 672 SMART arm_5 386 426 IPR000225 GO:0005515
Chy12g00185 672 SMART arm_5 468 508 IPR000225 GO:0005515
Chy12g00185 672 Pfam Armadillo/beta-catenin-like repeat 469 507 IPR000225 GO:0005515
Chy12g00185 672 Pfam Armadillo/beta-catenin-like repeat 551 590 IPR000225 GO:0005515
Chy12g00185 672 Pfam Armadillo/beta-catenin-like repeat 386 425 IPR000225 GO:0005515
Chy12g00185 672 Gene3D - 336 494 IPR011989 -
Chy12g00185 672 Gene3D - 495 657 IPR011989 -
Chy12g00185 672 Gene3D - 9 118 IPR036537 GO:0007166
Chy12g00185 672 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Chy12g00185 672 Pfam U-box domain 259 329 IPR003613 GO:0004842|GO:0016567
Chy12g00185 672 SUPERFAMILY RING/U-box 254 335 - -
Chy12g00185 672 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Chy11g01242 Chy12g00185 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01088 Chy-Chr3:14283989 Chy12g00185 Chy-Chr12:2245357 3.88E-27 dispersed
Chy03g01664 Chy-Chr3:18421852 Chy12g00185 Chy-Chr12:2245357 2.44E-52 dispersed
Chy12g00056 Chy-Chr12:498638 Chy12g00185 Chy-Chr12:2245357 1.50E-96 dispersed
Chy12g00185 Chy-Chr12:2245357 Chy12g01281 Chy-Chr12:17336515 4.61E-87 dispersed
Chy02g00356 Chy-Chr2:2295256 Chy12g00185 Chy-Chr12:2245357 1.62E-60 transposed
Chy02g00450 Chy-Chr2:2836400 Chy12g00185 Chy-Chr12:2245357 3.70E-07 transposed
Chy02g01845 Chy-Chr2:20755798 Chy12g00185 Chy-Chr12:2245357 3.90E-17 transposed
Chy03g00196 Chy-Chr3:1826834 Chy12g00185 Chy-Chr12:2245357 5.24E-126 transposed
Chy03g00609 Chy-Chr3:8656921 Chy12g00185 Chy-Chr12:2245357 1.50E-18 transposed
Chy03g00861 Chy-Chr3:11831154 Chy12g00185 Chy-Chr12:2245357 1.36E-32 transposed
Chy03g01589 Chy-Chr3:17917046 Chy12g00185 Chy-Chr12:2245357 9.59E-67 transposed
Chy04g00146 Chy-Chr4:1320304 Chy12g00185 Chy-Chr12:2245357 1.92E-09 transposed
Chy04g00352 Chy-Chr4:3125441 Chy12g00185 Chy-Chr12:2245357 4.03E-17 transposed
Chy04g00411 Chy-Chr4:3669453 Chy12g00185 Chy-Chr12:2245357 2.64E-15 transposed
Chy04g00817 Chy-Chr4:10644899 Chy12g00185 Chy-Chr12:2245357 2.07E-87 transposed
Chy05g00730 Chy-Chr5:9934829 Chy12g00185 Chy-Chr12:2245357 1.56E-61 transposed
Chy06g00053 Chy-Chr6:379928 Chy12g00185 Chy-Chr12:2245357 1.65E-13 transposed
Chy07g00624 Chy-Chr7:5781457 Chy12g00185 Chy-Chr12:2245357 9.84E-06 transposed
Chy09g00867 Chy-Chr9:11403672 Chy12g00185 Chy-Chr12:2245357 2.25E-132 transposed
Chy10g01080 Chy-Chr10:15896281 Chy12g00185 Chy-Chr12:2245357 2.39E-15 transposed
Chy10g01301 Chy-Chr10:17453715 Chy12g00185 Chy-Chr12:2245357 0 transposed
Chy11g00210 Chy-Chr11:1971633 Chy12g00185 Chy-Chr12:2245357 8.07E-09 transposed
Chy11g00773 Chy-Chr11:10806676 Chy12g00185 Chy-Chr12:2245357 1.49E-168 transposed
Chy11g01547 Chy-Chr11:22018713 Chy12g00185 Chy-Chr12:2245357 3.59E-09 transposed
Chy11g01242 Chy-Chr11:18538898 Chy12g00185 Chy-Chr12:2245357 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00185 - - csv:101218572 1192.95