Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00201 ATGCCTAAAACCGCCATTCTCCTCTGCATTGCATCTCTCATTTCAACAATGTGGCCGGCTGCCGCCAGAATTCCTGGCATCTACTCCGGCGGCCCATGGGAGAGTGCCCACGCCACGTTCTACGGCGGCTCCGACGCCTCCGGCACAATGGGTGGAGCTTGTGGGTATGGGAATTTGTACAGCCAAGGGTATGGAGTGAACACGGCGGCGTTGAGTACGGCGCTGTTCAACAATGGGCTGAGCTGTGGTGCTTGTTTCGAAATTAAATGTGCGAATGACCCAAGATGGTGCCATTCCGGCAGCCCGTCGATTGTTATTACGGCTACTAATTTCTGCCCTCCCAACTTTGCTTTGCCCAGTGATAATGGCGGGTGGTGTAATCCTCCTCGCCCGCATTTCGATTTGGCTATGCCTATGTTTCTCAAGATTGCTGAGTATCGCGCCGGAATCGTTCCCGTCGCCTACCGCCGAGTGGCGTGTCGTAAACCGGGAGGGATCCGGTTCACAATCCACGGGTTCAGATACTTCAACTTGGTGTTAGTCACCAACGTGGCGGGTGCAGGAGATATCGTGAAGGTGAGCGTGAAAGGCACGCGAACCGGGTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGTTCTAGTGGGTCAGGCCTTGTCTTTTAGAGTCACCGGCAGTGACAGACGGACCTCCACCTCCATCAACGTCGCACCCTCTGATTGGCAGTTCGGCCAAACCTTCACCGGCAAGAATTTTAGGGTTTGA 780 55.0 MPKTAILLCIASLISTMWPAAARIPGIYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIVITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKPGGIRFTIHGFRYFNLVLVTNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSINVAPSDWQFGQTFTGKNFRV* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2415956 2417312 - Chy12G208010.1 Chy12g00201 237982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00201 259 PANTHER EXPANSIN 5 258 - -
Chy12g00201 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Chy12g00201 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Chy12g00201 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Chy12g00201 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Chy12g00201 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Chy12g00201 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Chy12g00201 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Chy12g00201 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Chy12g00201 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Chy12g00201 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Chy12g00201 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Chy12g00201 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Chy12g00201 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Chy12g00201 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Chy12g00201 259 Gene3D - 165 257 IPR036749 -
Chy12g00201 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Chy12g00201 259 Gene3D - 22 161 IPR036908 -
Chy12g00201 259 PANTHER EXPANSIN-A15 5 258 IPR002963 GO:0009664
Chy12g00201 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Chy12g00201 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Chy12g00201 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Chy12g00201 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Chy12g00201 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Chy12g00201 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Chy12g00201 259 SMART dpbb_1 68 155 IPR007112 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy11g01222 Chy12g00201 CCT
Chy11g01222 Chy12g00201 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00568 Chy-Chr1:4083549 Chy12g00201 Chy-Chr12:2415956 1.39E-90 dispersed
Chy06g01979 Chy-Chr6:23805963 Chy12g00201 Chy-Chr12:2415956 3.88E-98 dispersed
Chy07g00932 Chy-Chr7:13528375 Chy12g00201 Chy-Chr12:2415956 1.49E-53 transposed
Chy10g00538 Chy-Chr10:11972620 Chy12g00201 Chy-Chr12:2415956 8.54E-167 wgd
Chy11g01222 Chy-Chr11:18396907 Chy12g00201 Chy-Chr12:2415956 3.81E-168 wgd
Chy12g00201 Chy-Chr12:2415956 Chy08g00748 Chy-Chr8:15209147 1.93E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00201 - - csv:101206662 545.043