Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00215 ATGGATAATCTCCTCGACGATTTTCCCAATTCTTGGACTAATAATTATCCCTTCCATCCCTATCTTTCTAATTCTCTGTTTAAAGTCAATCGTGATGCCGCCGATCACCTTCAGATTCCGGCTAAATCACATCAACACCAACACCAACACCTCCAACTTACTAACAATTCCTCCTCCTCCCCCTCTTCCTCTAGCTCCGAAGGAGATTCTCCCGATAGTCATGACACCTCAAACACCATGCTCAAATACATCACCGAGATGTTGATGGATGAAGCTGAAGATCTCAAAACACAGCCCTGTATGCTTCTTGACTGTTTGGCTCTTCAAGCTGCTGAGAAATCTTTTTATGATGTTCTTGGTCAGAAGTATCCCCCTTCTCCAACCTGTGATTCTTCTAGCTGTGATAGAGCTTTAGGAGGTGAAGATGAATCTGAATCTTTTAATGGTAACTCTAACTCCTCTTTTTTTCATCCTTTTCAAAACTCTGTTTTAAGTCAAGATTCGTTTCTTGGGATGCAATTTCTTGGCCATTTTAGACAAGGAGCTGAGGAAGCTAGTAAGTTTCTTCCTGTTAATGGAAGATTTGGAACCATTGCCTTGGATAATGATTCTTCTAGTTCTACCTCTTTTCCTTCTAGGCCAGTTGATTTTTCTTGGGTTGCTGCTGAGAATGATGGTAGATCCAGCCTTGAAAATGGGTTGTTAAGAGAGAAGAAAAACCGTTTGAGGGAAGATAGTGATGAGGAGTTGAGAAGTAGTAAACAATCTGCTAATTTTGTTGATGATAATTCACTGTCTGACTTGTTTGATGAGGTTCTTCTTTGTCGTGGCGAGAGTCGGCAGTCTCCGCCGTCGTGTGGTTCCGATGAATCGTCCGAGAGCGAAGCCAATAAGAAATCGAGAGGGAGAGGGAAAAGGAAAGGGAAGAAAAGTAGTCGTTCTAGGAAGCAAGAGAACAGTGTGGAAGTTGTGGATTTGTGGACATTGTTAACTCAATGTGCTCAAGCTGTTTCAAATTATGATCAAAGAACTGCCAATGAACTGCTCAATCAAATCAGGCAGCATTCTAATCCATCTGGGGATGGTAATCAAAGATTAGCTCATTACTTTGCTAAGGGTCTCGAGACTCGTCTTGCCGCTGGTACGCCTCTATATTTGCCCTTTGCAAGTAATGAAACCTCTGCTGCTGAGATCTTGAAAGCTTATCAGATGTTCATCAAGGCGTGTCCGTTTCGGCGGATGTCATATTTCTATGGCAATAGAACAATTCTGAAGTTAGCCGAGAAAGTAACAACATTGCATATTGTTGATTTTGGGCTATTGTATGGTCTCCAATGGCCCTGCTTGATTCAACGGCTTTCGCGTAGACCTGGTGGACCTCCGAAGCTTCGGATAACAGGGATCGAGCTTCCCCAGCCAGGATTCCGCCCTGCTGAACGTGTTGAGCAGACCGGTCGTCGTCTTGCACATTACTGCAAGAGATTCAATGTCCCATTTGAACACAAGGTCTTGGCACAAAAATGGGAAACGGTTCGATATGAGGATCTGAATCTTGATAGAGATGAACTGACAATTGTGACTTGTATGTTCCGAATGAAGAACGTACCCGACGAAACAGTAGTGGCAAACAGCCCGAGAGACAGGGTTCTAAAGTTGATCAGGAAAATCAATCCAGATCTCTTCATTCATGAAGTCACCAATGGTTCATTCAACACTCCATTTTTCAACACAAGGTTTAAAGAGGCACTCTTTTACTACTCGTCGTTGTTCGACATGTACGAAGCAACAGTGCCTCGAGACAATCCCCAGAGGTTTCTGTGTGAGAAGGAAATCCTAGGAAGAGACATCATGAATGTGATAGCGTGCGAGGGGCTTGAGAGAGTGGAAAGGCCAGAGACATACAAGCAATGGCAAGTAAGGAACACAAGGGCCGGGTTCAAGCAAGTACCACTAGACCAAGATTTGCTGAAGTGTGTGGAGAAGATAGTGAACACAGAATACCATCAGGACTTCAATATCGATCAAGACGGGTCGTGGATGTTGCAAGGTTGGAAAGGACGGATTATCGACGCATTATCATGTTGGGTTGTTGCCTAA 2097 43.73 MDNLLDDFPNSWTNNYPFHPYLSNSLFKVNRDAADHLQIPAKSHQHQHQHLQLTNNSSSSPSSSSSEGDSPDSHDTSNTMLKYITEMLMDEAEDLKTQPCMLLDCLALQAAEKSFYDVLGQKYPPSPTCDSSSCDRALGGEDESESFNGNSNSSFFHPFQNSVLSQDSFLGMQFLGHFRQGAEEASKFLPVNGRFGTIALDNDSSSSTSFPSRPVDFSWVAAENDGRSSLENGLLREKKNRLREDSDEELRSSKQSANFVDDNSLSDLFDEVLLCRGESRQSPPSCGSDESSESEANKKSRGRGKRKGKKSSRSRKQENSVEVVDLWTLLTQCAQAVSNYDQRTANELLNQIRQHSNPSGDGNQRLAHYFAKGLETRLAAGTPLYLPFASNETSAAEILKAYQMFIKACPFRRMSYFYGNRTILKLAEKVTTLHIVDFGLLYGLQWPCLIQRLSRRPGGPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEHKVLAQKWETVRYEDLNLDRDELTIVTCMFRMKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRFLCEKEILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQDLLKCVEKIVNTEYHQDFNIDQDGSWMLQGWKGRIIDALSCWVVA* 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2538666 2540762 + Chy12G208150.1 Chy12g00215 237996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00215 698 ProSiteProfiles GRAS family profile. 317 696 IPR005202 -
Chy12g00215 698 MobiDBLite consensus disorder prediction 279 317 - -
Chy12g00215 698 MobiDBLite consensus disorder prediction 40 77 - -
Chy12g00215 698 MobiDBLite consensus disorder prediction 44 77 - -
Chy12g00215 698 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 39 696 IPR005202 -
Chy12g00215 698 MobiDBLite consensus disorder prediction 125 151 - -
Chy12g00215 698 PANTHER SCARECROW-LIKE PROTEIN 30 39 696 - -
Chy12g00215 698 Pfam GRAS domain family 328 695 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g00700 Chy-Chr11:8882365 Chy12g00215 Chy-Chr12:2538666 3.47E-66 dispersed
Chy12g00215 Chy-Chr12:2538666 Chy03g00094 Chy-Chr3:912130 3.63E-62 dispersed
Chy01g01269 Chy-Chr1:15817039 Chy12g00215 Chy-Chr12:2538666 1.25E-66 transposed
Chy04g01026 Chy-Chr4:15263883 Chy12g00215 Chy-Chr12:2538666 1.20E-62 transposed
Chy09g01383 Chy-Chr9:15601648 Chy12g00215 Chy-Chr12:2538666 9.31E-46 transposed
Chy11g01219 Chy-Chr11:18370398 Chy12g00215 Chy-Chr12:2538666 0 wgd
Chy12g00215 Chy-Chr12:2538666 Chy04g02153 Chy-Chr4:26695033 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18824 PF03514 GRAS 5.90E-113 CL0063 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00215 - - csv:101217374 1321.61