Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00232 ATGGCGGAGATTTGTTGTAAAGTTATGAGTGAGAGTGAGGCGTCGTCGTCTTGTGAGCCGAGCTCGCGTGTGGCTAGACGTCGGAGAATGGAGATCAGGAGATGTAAATTTGTTACCAGGGTTGATCCGTCCGAGACGGAGACTGTTGCGAAACGGCAGAAGCTGGAGGATCGAGCTACGTTGATTTCTAGAGATTGTGATAACGCGGTTCAGAATTGTGATTCGGGAGAAGAAGAAACCGTTGGGAGATTTGTGGTTGGAGAGGTTTCGACGAAGGAGGTTTCGATTCCTCTGTCTAGGGAATCTTCTTGTGGGGTAGTGGTTCCGAAATTTGGATTCTCTTCTGTTTGTGGAAGGAGAAGAGAGATGGAGGATGCGGTGGCGGTTCATCCATCGCTCTGTTCCACGGAGAAGGAAGCTAATGATATGTTGCACTTCTTCGGTGTTTACGACGGCCATGGCTGTTCTCATGTGGCGATGAGGTGTAAGGAGCGGCTGCATGAACTGGTAAAAGATGAGTTAGATAAGAATGAGAAGGAAGACGCCACCGGTGCGGCGGAGACAGAGGCGGAGACGGCGTCGCGGTGGGACCGTACTATGAAGAGAACCTTCTGGAGAATGGACAACGAAGTTGTGGCGCGAAACAATGAAGAAGTGGTTGCGAACTGTAGATGCGAACTACAGTCGCCGGATTGCGATGCCGTTGGATCTACCGCCGTCGTCGCAATTGTGACGCCGGATAAGATCATCGTCGCCAACTGCGGCGATTCCAGAGCCGTTCTCTGCCGTAACGGAAAGGCCATCCCTCTCTCCTCCGATCACAAGCCGGATCGTCCCGATGAACGTAGCCGGATCGAGGAAGCCGGCGGACGAGTGATTTACTGGGACGGACCGAGAGTCCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAATTATCTGAAACCGTATGTGATATCGGAACCAGAGGTGACGATAACGAATCGTACGGCGGAGGATGAGTGTTTGATATTAGGGAGCGATGGACTATGGGATGTGGTGCCGAATGAGACGGCATGTGGAGTGGCAAGCATGTGCTTGAGAGGGAAGGCGGAGGAGAGGTCACCGGTGTCGCCGTCGAGGGAGGCGGAGACAGCGGCGGAAGGGGAGGAGAGAGGAAACGCCGACAAGGCCTGCAACGATGCGTCGATGCTGCTGACGAAGCTGGCGTTGGCTAGGCACAGTACGGACAACGTGAGCGTTGTGGTGGTGGACCTTAAGAGGGACACTTACCCTTAG 1281 53.86 MAEICCKVMSESEASSSCEPSSRVARRRRMEIRRCKFVTRVDPSETETVAKRQKLEDRATLISRDCDNAVQNCDSGEEETVGRFVVGEVSTKEVSIPLSRESSCGVVVPKFGFSSVCGRRREMEDAVAVHPSLCSTEKEANDMLHFFGVYDGHGCSHVAMRCKERLHELVKDELDKNEKEDATGAAETEAETASRWDRTMKRTFWRMDNEVVARNNEEVVANCRCELQSPDCDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGKAIPLSSDHKPDRPDERSRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITNRTAEDECLILGSDGLWDVVPNETACGVASMCLRGKAEERSPVSPSREAETAAEGEERGNADKACNDASMLLTKLALARHSTDNVSVVVVDLKRDTYP* 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2656877 2658502 - Chy12G208320.1 Chy12g00232 238013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00232 426 Gene3D - 100 424 IPR036457 -
Chy12g00232 426 ProSiteProfiles PPM-type phosphatase domain profile. 110 420 IPR001932 -
Chy12g00232 426 SUPERFAMILY PP2C-like 103 421 IPR036457 -
Chy12g00232 426 PANTHER PROTEIN PHOSPHATASE 2C 37 44 423 - -
Chy12g00232 426 MobiDBLite consensus disorder prediction 368 391 - -
Chy12g00232 426 ProSitePatterns PPM-type phosphatase domain signature. 146 154 IPR000222 GO:0043169
Chy12g00232 426 MobiDBLite consensus disorder prediction 365 391 - -
Chy12g00232 426 Pfam Protein phosphatase 2C 110 372 IPR001932 -
Chy12g00232 426 PANTHER ALPHABET, ISOFORM E-RELATED 44 423 - -
Chy12g00232 426 SMART PP2C_4 100 418 IPR001932 -
Chy12g00232 426 CDD PP2Cc 110 420 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00232 Chy-Chr12:2656877 Chy03g00572 Chy-Chr3:8152002 4.94E-46 dispersed
Chy02g01154 Chy-Chr2:8273182 Chy12g00232 Chy-Chr12:2656877 1.44E-79 transposed
Chy03g00673 Chy-Chr3:9296848 Chy12g00232 Chy-Chr12:2656877 6.11E-78 transposed
Chy04g00664 Chy-Chr4:7650706 Chy12g00232 Chy-Chr12:2656877 4.56E-78 transposed
Chy06g00889 Chy-Chr6:6418046 Chy12g00232 Chy-Chr12:2656877 2.61E-100 transposed
Chy06g01234 Chy-Chr6:11214979 Chy12g00232 Chy-Chr12:2656877 1.01E-78 transposed
Chy12g00232 Chy-Chr12:2656877 Chy03g00143 Chy-Chr3:1306793 1.47E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00232 K14497 - csv:101206871 790.415