Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g00233 ATGGGGGAGGAGGAAGTGCTTATTTTGAAAACAGAACACTGGGATGATATTAAGATGCCAATAGTTGCTAAGAAGAGGAATGTTGTTATTCCCACTTCCACTTCCTCAGAAGTTAAATGTTGCAATTCTGGCTGTGCTTTTTCCAGATTAGAACATAGTAATTTGGAGTCAATAAAGCGTTCTAAATCAGCTATGAAGCTTGGTGGATTGATATTGTTTTATACTATAGCTATAGTAGTGGAGATTATTGGTGGTTTGAGAGCTAATAGTCTTTCTGTAATGACAGATGCAGCTCACTTGCTTAGTGATGTTGCTGGTTTCTCTGTTTCCCTCTTTGCAGTTTGGGTTTCGGGTTGGGAGGCGACACCGCAACACTCGTTCGGGTATAACCGTCTTGAAGTTTTAGGTGCCCTTGTGTCTGTACAACTTATATGGCTGATTTCTGGGATATTAATCTACGAGGCGATTGACCGGATTCTTGCACAAAAGACTAAGGTGGATGGTTTCCTTATGTTTGCCGTTGCAGCTTTTGGATTCCTTCTTAACTTGTTTATGGTTATTTGGCTTGGCCATAGCCACCACCACCACCACCACCACTCTCATTCATCTCATTGTTGCCATCATGATCATCACTCTCATTCTCATTCTCATCAGAATCACTTGGAGCATGAGGAAGAGGAGATTTACACATTAACCAAACAAGAAGGTGCTTCTTTGGGATCAAAGGACAATAGTTCAACGTTGAACATAAATCTCCAAGGCGCTTATCTTCATGTGATTACTGATATGATTCAATCTATTGGTGTGATGATTGCTGGATTCGTTCTTTGGTTTAAACCCGAGTGGATCGTCGTAGATTTAATCTGCACTCTTGTATTTTCTGTTCTTGCTTTAGCTACTACTTTCTCTATGCTTAGACATATAGCTGTTATATTGATGGAAGGAACACCTGGGGAGGTCCATATTGAGAGCTTAGAAAATGACATCAAGAACATAAAAGGAGTTTATGATTTGCATGACTTGCACATTTGGTCCATAACGGTTGGAAAAGTCGTGTTGTCGTGCCACGTTGTTGCTGAAGCCGGAGTTTGTTCTAGGGAGCTAATTTTGAAGATTAAAAGCCATTGTGAAAAGAGATACAATATAGTCCATACCACCATACAAGTTGAGTAA 1173 40.24 MGEEEVLILKTEHWDDIKMPIVAKKRNVVIPTSTSSEVKCCNSGCAFSRLEHSNLESIKRSKSAMKLGGLILFYTIAIVVEIIGGLRANSLSVMTDAAHLLSDVAGFSVSLFAVWVSGWEATPQHSFGYNRLEVLGALVSVQLIWLISGILIYEAIDRILAQKTKVDGFLMFAVAAFGFLLNLFMVIWLGHSHHHHHHHSHSSHCCHHDHHSHSHSHQNHLEHEEEEIYTLTKQEGASLGSKDNSSTLNINLQGAYLHVITDMIQSIGVMIAGFVLWFKPEWIVVDLICTLVFSVLALATTFSMLRHIAVILMEGTPGEVHIESLENDIKNIKGVYDLHDLHIWSITVGKVVLSCHVVAEAGVCSRELILKIKSHCEKRYNIVHTTIQVE* 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2670518 2671690 + Chy12G208330.1 Chy12g00233 238014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g00233 390 PANTHER METAL TOLERANCE PROTEIN B 5 390 - -
Chy12g00233 390 Gene3D Cation efflux protein transmembrane domain 67 312 IPR027469 -
Chy12g00233 390 MobiDBLite consensus disorder prediction 200 219 - -
Chy12g00233 390 MobiDBLite consensus disorder prediction 200 214 - -
Chy12g00233 390 Pfam Cation efflux family 71 313 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Chy12g00233 390 TIGRFAM CDF: cation diffusion facilitator family transporter 71 390 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Chy12g00233 390 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 318 390 IPR036837 -
Chy12g00233 390 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 5 390 - -
Chy12g00233 390 SUPERFAMILY Cation efflux protein transmembrane domain-like 68 314 IPR027469 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01782 Chy-Chr4:24139627 Chy12g00233 Chy-Chr12:2670518 2.34E-07 dispersed
Chy11g01931 Chy-Chr11:25410441 Chy12g00233 Chy-Chr12:2670518 1.32E-43 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g00233 K14689 - csv:101215692 675.241